Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0740 ATGGAGGCTAAATTTAGGGGAAAGAGTCAGTGTGTGTATGGACCTGTGGTTCCGGAAGTGAAGGCAGTTGGGAAGAAGAGTTTGGAGTGGAATTTGGAAGACTGGAAATGGGACGGAGATCTTTTCACGGCTACTCCATTAAATTCAGTTCCATCTGATTGTAGGAATAGGCAGTCTTTCCCAGTTGATCCTGAAATTCCTGCAAAAGCTAACAGTTCATCATCTAATTGGGATGATTTTAACAAAGAGAAAGGGAACAGGGAGTTGGAAAAAAGGAGGAGAGCTGTTATAGCTGAAGGGGATGAGCTGAATGATGAAGAAGGTGGTTGTCTTAATTTAAACCTTGGGGGTCAAATTTACCCTATCATGGAAGGGGATGAAAAAAGCGGGAAGAAGACTAAGATAGTTGGGACTGGGACTACTTCAAACCGAGCCGTTTGTCAGGTTGAAGATTGTAGGGCTGATCTTAGTAATGCAAAGGATTACCACCGTCGGCATAAGGTTTGTGATATGCATTCCAAGGCTAGTAAGGCACTGGTGGGAAATGTTATGCAGCGTTTCTGTCAGCAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGCTGCCGTAGGCGTTTGGCAGGCCACaataggaggaggaggaagacgcATCCTGATGCTGTAGTTAATGGAGGCTCCCTAAATGATGAAAGGGGTAGTAGCTATCTGTTGACGAGTCTTCTCCGTATACTGTCCAATATGCACTCAAATGGCTCAGATCTTACGAGGGACCAAGATATTTTGTCTCATCTGCTAAGGAACCTTGCGAGTCTGGCTGGTACAATCAATGAAAGGAATATAGCCTCCTTATTGGAGGGATCCCAAGGATTGGTGAATGCTGGGACATCTGGAGCTGCGCAGAAGGTGCCTAATCTAAATTCCGATGGCCCTGAATCCTTCAGGCCTTCGGATTCTTCCATCAAATTGGATAATGGTCTCAGCAGTCAGGACCCTCCAAAGTCTATTGGACAGACAATGCCTGCTTATGATATGGCACAAAAATGTTTACCTTCAGGTGATGGTGGAGTAGGAAGTTTAAAATCACCTTCAGGACCACAGTCTTCAAATGGACTTCTGATCAGGGATAGCCTCCCATCCCAATTAGTTACAGCAGATGCTAAAGTTGGAAGGAATGGCTTAAATAACATTGACCTGAATAATGTATATGATGACATACAGGACGACGCTGAGAATCTTAGGAAGTCTCATCCCCCTGTGGCTTCCAGGATTGGTTCTCTTGATCATCATCCTTCATGGTTGCAGCTTGAATCTCACAAGTCCAGCCCACCACAGACAAGCGGAAACTCAGATACAACCTCTACCCAGTCACCTTCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTCAAACTCTTCGGGAAGGATCCAAATGATTTTCCCCTTGTTCTCCGATCACAGATTCTCAACTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTACATAAGGCCAGGCTGTATCATATTAACAATATATCTTAGTTTAGAAAAATCTGCATGGGAGGAGCTCTGCTGCAATCTTGGACCCAGCTTGAAAAAGCTTCTTGCAGCATCAAATGATTCTTTCTGGAGGACAGGATGGGTATATATAAGGGTGCGGCACTCTGTAGCTTTTCTGTACAATGGTCAGCTTGTCTTGGATGTTCCCCTGCACCTCAGAAGCCCACAACATTGTACGATTTCATGTATTAAACCACTTGCTGTTTCCGCAAATGAAAGCACTCAATTTATTGTAAAAGGTCTCAATCTTTTGCGTTCTAGCACAAGGTTACTCTGCGCACTTGAAGGGAAGTATCTGGCACAGGATAGTTGTTGTGACTTGATTGATGGTGCCGATGCAGCTACTGAACACGATGAGCTTCAGCGCCTTACCTTCTCTTGTCATATACCAAGTGTAACTGGGAGGGGATTTATTGAGGTGGAAGATCATGGTCTTAGTAGCTGTTCCTTTCCTTTTATAGTTGCAGAGCCAGAAATTTGTTCAGAGATCTGTAACCTGGAGAGTGTAATTGAGGCAGCTGAGAATTGTAAAGACATTCAGATGAGAAgtaaacaaattgaagaaaagactCAAGCCTTGGATTTCATACAAGAATTGGGTTGGCTCCTTCATAGAACTCATATGAAAGTTAGGTTGGGTCCCATGGCACCGGTCCAGGATCTATTCCATTTCAATCGGTTCAAGTGGCTTGTTGACTTCTGCATGGACCATGATTGGTGTGCTGTGATGAAGAAGCTCCTGGACATTATGTTTGAGGGTACTGTTGATGTAGGAGAGCATACCTCCATTGAACTGGCCTTGTTAAACTTGAGTCTTCTACACAAAGCTGTGAAGAGAAATTGTAGACCTATGGTGGATCTACTGTTAAAATTTGAGCCAGTACAAACTTCGGAGGGCATGGACAGTGAGGAGAAGCAAGTTGACAAACACTCAAAGAGATTCTTATTTAAACCCGATGCTCTTGGTCCTGCTGGATTGACACCCCTACATGTTACTGCAAGTATGAATGGCTTAGAGAATGTATTGGATGCATTAACTGATGATCCTGGAATGGTGGGAATTGAGGCATGGAAAAATGCTCGGGACAACATGGGGTTGACACCAAATGACTATGCATCCATGAGGGGCTACCACTCCTACATTCAACTTGTCCAGAGGAAAACGAGCAAGAAAAGTGAAACTCATCATCATGTGCTTGATATTCCTAGCAGTATCCTTGCAGATAGCAACACAAAGAAGAAGCAGTCAGATCGGCATAGGTCATCGTCAAAAGTTTCAAGCTTGCAGACTGAGAAGATCGAAACGGCTGCAGCAATACCCCGTCACTGTGAGCTATGCGAGCGCAAGCTGACTTATAACAGCACGAGAATGGCGCTGGTTTATAGGCCGGCAATGCTCTCAATGGTGGCCATTGCAGCTGTATGTGTCTGTGTGGCATTGCTGTTCAAAAGCTCACCCAGAGTTTCCTGTATCTTCCAGCCCTTCAGATGGGAATCATTGGACTATGGCTCAATGTAG 3105 0.4396 MEAKFRGKSQCVYGPVVPEVKAVGKKSLEWNLEDWKWDGDLFTATPLNSVPSDCRNRQSFPVDPEIPAKANSSSSNWDDFNKEKGNRELEKRRRAVIAEGDELNDEEGGCLNLNLGGQIYPIMEGDEKSGKKTKIVGTGTTSNRAVCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDAVVNGGSLNDERGSSYLLTSLLRILSNMHSNGSDLTRDQDILSHLLRNLASLAGTINERNIASLLEGSQGLVNAGTSGAAQKVPNLNSDGPESFRPSDSSIKLDNGLSSQDPPKSIGQTMPAYDMAQKCLPSGDGGVGSLKSPSGPQSSNGLLIRDSLPSQLVTADAKVGRNGLNNIDLNNVYDDIQDDAENLRKSHPPVASRIGSLDHHPSWLQLESHKSSPPQTSGNSDTTSTQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPLVLRSQILNWLSHSPTEIESYIRPGCIILTIYLSLEKSAWEELCCNLGPSLKKLLAASNDSFWRTGWVYIRVRHSVAFLYNGQLVLDVPLHLRSPQHCTISCIKPLAVSANESTQFIVKGLNLLRSSTRLLCALEGKYLAQDSCCDLIDGADAATEHDELQRLTFSCHIPSVTGRGFIEVEDHGLSSCSFPFIVAEPEICSEICNLESVIEAAENCKDIQMRSKQIEEKTQALDFIQELGWLLHRTHMKVRLGPMAPVQDLFHFNRFKWLVDFCMDHDWCAVMKKLLDIMFEGTVDVGEHTSIELALLNLSLLHKAVKRNCRPMVDLLLKFEPVQTSEGMDSEEKQVDKHSKRFLFKPDALGPAGLTPLHVTASMNGLENVLDALTDDPGMVGIEAWKNARDNMGLTPNDYASMRGYHSYIQLVQRKTSKKSETHHHVLDIPSSILADSNTKKKQSDRHRSSSKVSSLQTEKIETAAAIPRHCELCERKLTYNSTRMALVYRPAMLSMVAIAAVCVCVALLFKSSPRVSCIFQPFRWESLDYGSM 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0740 1034 Gene3D - 138 208 IPR036893 GO:0003677|GO:0005634
Sto3g0740 1034 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 1033 IPR044817 GO:0003677
Sto3g0740 1034 SUPERFAMILY Ankyrin repeat 798 912 IPR036770 -
Sto3g0740 1034 MobiDBLite consensus disorder prediction 300 340 - -
Sto3g0740 1034 MobiDBLite consensus disorder prediction 300 377 - -
Sto3g0740 1034 MobiDBLite consensus disorder prediction 55 85 - -
Sto3g0740 1034 Pfam SBP domain 147 220 IPR004333 GO:0003677
Sto3g0740 1034 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 13 1033 - -
Sto3g0740 1034 Gene3D - 772 930 IPR036770 -
Sto3g0740 1034 MobiDBLite consensus disorder prediction 440 471 - -
Sto3g0740 1034 MobiDBLite consensus disorder prediction 940 954 - -
Sto3g0740 1034 ProSiteProfiles Zinc finger SBP-type profile. 144 221 IPR004333 GO:0003677
Sto3g0740 1034 MobiDBLite consensus disorder prediction 938 958 - -
Sto3g0740 1034 Coils Coil 86 106 - -
Sto3g0740 1034 Coils Coil 400 420 - -
Sto3g0740 1034 MobiDBLite consensus disorder prediction 211 231 - -
Sto3g0740 1034 SUPERFAMILY SBT domain 145 226 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0740 Sto-Chr3 5088223 5094005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0740 1 1033 SBP-box Gene Family AT3G60030 47.459 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto3g0740 SBP 8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0740 - - gmx:100776125 1493.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0740 3 5088223 5094005 Sto3g0740 3 5088223 5094005 ECH