Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0717 ATGAAGGGAGAGAATGACACATACAAAACATCCTTTGAAGTGGATGATaaaattgaaagaaatgaaGTACTACAAATTAAATgttataagaataaaaaatttagctTCGAGAACCTATGCTATATGCACCTGCCAGTAACCTTTTCGAGTGATCGGAACAAATGTATGCGAACCCTTGAATCCAAATATCCCATCAAGATTTGCAACATTATAGGATcccAGAAAACAAGAATGAGGAATGCAAATGGCAAATCCATTTCATGGTGGTTCGGAGACCTCTCAATCTCAATACTTAGATACGTACTGAGTATTCTTAgtggtcatggtggtgagtgtgatcGTGGTAGttttttgatagTAAAACCCATTTCTGATTCTCTAAGAGTCGAGTATGTGAGGAGACTTACTGAAGGATATCCTTCTTATTTTGTATCAGGCAGATACCTATTTAAATCTGAGTGCATCGAGCCATTGCTAATGCATCTTCTatatatatatatttgtttCGAGAAGGTGTTAGTTCTCATACTTGCACCCTCTTCATTACGTTTGCAATGGGCTACTGTTGTACTATCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCACTATAGTATCTTCAAATACCAAAGGCAGTATTCATCTTGATGGACTATTCAACATTATCTCTTATGATTTGGTCCCAAAGATACAGAATATGCTTATGGCATCTGACTTTAAGGTTGTGATTGCAGATGAATCACACTTTCTGAAAAATGCTCAAGCAAAGAGGACTACTGCTTCTCTTCCAGTTATAAAGAAAGCTCAATATGCAATACTGCTAAGTGGAACTCCTGCTTTGTCCCGGCCAATTGAACTATTCAAGCAGCTGGAAGCCTTGCATCCTGATGTATATAAAAATGTTCATGAATATGGCAACCGGTATTGCAAGGGTGGAGTTTTTGGAGTTTACCAAGGTGCAAGTAACCATGAAGAATTGCACAATTTGATGAAGGCAACAGTGATGATTCGCAGGCTGAAAAAGGATGTTCTATCTCAACTTCCTGTAAAGAGGAGGCAGCAGGTCTTCCTGGATTTGGCTGACAAGGACATGAAGCAAGTCAATGCTTTATTCCGAGAGttGGAGTTGGTTAAAGCCAAAATTAAGGCATCCAAATCAAAAGATGAGGTTGAATCACttaaatttactcaaaaaaatcttattaacAAGATATATACTGAATCTGCCGAAGCCAAGATCCCTGCAGTTCTTGATTATGTTGGAACTGTTATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACATCATCAACCAATGGTCGACTcaatacatgattttcttattAAAAAGAAAGTGGGTTGCATCCGTATTGATGGCAATACACCCCCTGCATCAAGGCAGGCAATGGTGACAGATTTTCAAGAGAAAGAATCTATCAAGGCAGCAGTGTTATCTATCAAAGCTGGAGGAGTTGGGTTAACTTTAACTGCTGCCAGCACTGTCATTTTTGCAGAATTGTCCTGGACTCCAGGGGACCTAATTCAAGCAGAGGACCGTGCTCATAGAATTGGCCAGGTATCGTCAGTAAATATATACTACTTGCTAGCAAATGACACAGTTGATGATATAATATGGGATGTAGTGCAGAGCAAATTGGAAAATTTGGGACAGATGTTAGATGGCCATGAGAACACTATGGAGGTCTCAACTACTCAGCCGGGGAATAGTCCTGCGAAGCAGAAAACTCTTGACTCCTATGTTAGAAAATGTAATAACATGGATGAGCTAGAACATCATTCCTTGGTAAAAGTGGGTGCTCACACTGGCGTCTCTATTGGTATATTTCATTCTCATGTCAATGCCAAGGGACAGCTTTCTAAAGCAGGTTTCCTCTACACATTTCAATCTTCGCCATTGCGAATATTTCAGATGGCTTTCATGGCTGTGTTCTTCCTTGTCCTCGAGTTCTGGGAAATGTACAGAGCACACTATCATATTCTTAAGGCTATCACCCCATTGCCATGCGGTGAAGCAAAGGCTTCCTTTAGGCGCATTTGA 2058 0.3795 MKGENDTYKTSFEVDDKIERNEVLQIKCYKNKKFSFENLCYMHLPVTFSSDRNKCMRTLESKYPIKICNIIGSQKTRMRNANGKSISWWFGDLSISILRYVLSILSGHGGECDRGSFLIVKPISDSLRVEYVRRLTEGYPSYFVSGRYLFKSECIEPLLMHLLYIYICFEKVLVLILAPSSLRLQWATVVLSQSGGSNRGGFTIVSSNTKGSIHLDGLFNIISYDLVPKIQNMLMASDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALHPDVYKNVHEYGNRYCKGGVFGVYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQVNALFRELELVKAKIKASKSKDEVESLKFTQKNLINKIYTESAEAKIPAVLDYVGTVIEAGCKFLIFAHHQPMVDSIHDFLIKKKVGCIRIDGNTPPASRQAMVTDFQEKESIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTMEVSTTQPGNSPAKQKTLDSYVRKCNNMDELEHHSLVKVGAHTGVSIGIFHSHVNAKGQLSKAGFLYTFQSSPLRIFQMAFMAVFFLVLEFWEMYRAHYHILKAITPLPCGEAKASFRRI 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0717 685 SMART helicmild6 441 524 IPR001650 -
Sto3g0717 685 Gene3D - 379 613 IPR027417 -
Sto3g0717 685 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 167 589 - -
Sto3g0717 685 CDD SF2_C_SNF 411 535 - -
Sto3g0717 685 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 416 567 IPR001650 -
Sto3g0717 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 349 IPR027417 -
Sto3g0717 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 570 IPR027417 -
Sto3g0717 685 Pfam SNF2-related domain 174 387 IPR000330 GO:0005524|GO:0140658
Sto3g0717 685 Gene3D - 158 363 IPR038718 -
Sto3g0717 685 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 167 589 IPR030101 GO:0006281|GO:0031297|GO:0036310
Sto3g0717 685 Pfam Helicase conserved C-terminal domain 423 524 IPR001650 -
Sto3g0717 685 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 296 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0717 Sto-Chr3 4928927 4941259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0717 414 564 RAD5 or RAD16-like Gene Family AT1G11100 34.437 1.22e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto3g0717 SNF2_N 3.9e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0717 K14440 - jre:109005657 755.747