Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0667 ATGGGAGTGGTGGACCATATGGAACAATTAGATTTAGACAGAAACATTGAACTGTTGCGGCAGGATACATGCACACTTGAAGGCTACAAGATACAAGCTAAAACCAAAGAACGGCTATCTTCGCTCGGGGTGTTGACTGTTGCACTTCAAGGGACTGCTGAGAAAATTGCAATTACACTAAATGTGGTTCTGAATAGCCCTTGTAGAGATAATTATAGATtgcgaaaccctagacccgataGAAACCCATTTCAATCAACCTCAGTAGAATCGCGCATAAACAGCAACGAGAGCTTACAAATTTCGAAGCTTTCGTCTTCTTCGAGTGCCAAATTTTCACAGTTGCGCCTTGCCGAGCTCCAAATTCATCTCATTGTCTGTgtaaatttgttttctttaataagAAATCGTAGACTCGTTAATGCTGCCACGGGCACCGGGAAGACTATTGCATACTTGGCTCCAATTATTCATCATCTGCAGAATTATGATAATAGAATCCAGAGTTCTGATGGAACATATGAATTTGTGAGATTTTCTTCTCTTGCCAGCCTGCAGGTTTATGAAATTCTTCAAAAGTTATTGCATCGATTTCACTGGATTGTACCTGGATATGTAATGGGTGGTGAAAATAGGTCAAAGGAAAAAGCCAGGCTGCGTAAAGCAACTCCTGGGCGCCTTTTGGATCACTTGAAGAATACATCATCATTCTTGTACACCAATTTGCGCTGGATAATCTTTGATGAAGCTGATCGGATTCTAGAATTAGGATTtggaaaagaaataaaggaaaTACTAGATCATTTAGCTACTTTAAATGAAAAGGTTAATCATCTTGCTAAAATCAGTCTAGAGGATCCTGTGATGATTGGTCTTGATGGCAAAAGAACAGAACCAATTTCAAAAATTGAGAGTCTTGGCTCGTCAGATTCTGATGAGGACAATGAATACAATGAAGAGAAGAATCATAGTAAAATCCTGGACACGCAAATTGGAGATTATAATGTCCCCACACAATTGATTCAGAGATATGTTAAAGTACCTTGTGGAGCGCGTATTGTTGTGCTTCTTTCCATTCTGAAGTATCTTTCTGAAAGGGAAGCTTCACAAAAGATTGTGGTCAGTTCAACATGCGATGCAGTGGATTTTCACTTTTCACTGCTAAGTGAATTCCAATTTTCATCCTATCCACAATCAGAAACAGACGTTAGACAGATGTTTATGGGATGCAAAATGTTCCGTTTGCATGGAAACATGGATCAGGAGGATCGGAGGAAAACTTTTCAGACTTTTAAGACAGAAAAATCAGCCCTACTGTTTTCCACTGATGTAGCTGCTAGAGGCTTGGATTTTCCAAAAGTTAGATGTATTATACAATATGATTCTCCCGGGGAAGCTACTGAATATGTGCATAGAGTTGGAAGAACTGCTCGGCTGGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAGCCAGTTGAAATAGATTATTTACAGGACTTGGCAAAACATGGTGTATCACTAACAGAGTATCCTCTCCTCAAAGTGTTGGATAGTTTTCCATTACGTGGTCAAACGAACGACATCAAGAAGTTTGTTGCCATAGACTCACATCCCTGGGTGGTTTGTCTCCAGAAGGCACTTGAAGCCTTCATCATGTCTAAGCCGAAGATAGATAAACTTGCCAAGAGGGGATTTTGCTCTTGGGTACGAGCCTACACAGCCCATCGTGGCGAGTTGAAAAGGATATTTATGATCAAGAAACTTCACTTGGGGCATGTAGCAAAAAGCTTTGCACTGAAACAGCAGCCTTCGTTGGTTGGAAAATCGTACCAGAAGCAGCAAGTCAAAAGGAAGAGATTTCAGAAGCAAAGTGGTGTGTCAAAAAAGAGGAGAAAGATTACCAATATTTTTCCTCCTGTTCATCTCACATGCAATCATACCTCATGGGCTACTGAGTTTATCCCAAGTATTGCAGTGTATGAACTACGAAGCACCAGTACTTAA 2004 0.3932 MGVVDHMEQLDLDRNIELLRQDTCTLEGYKIQAKTKERLSSLGVLTVALQGTAEKIAITLNVVLNSPCRDNYRLRNPRPDRNPFQSTSVESRINSNESLQISKLSSSSSAKFSQLRLAELQIHLIVCVNLFSLIRNRRLVNAATGTGKTIAYLAPIIHHLQNYDNRIQSSDGTYEFVRFSSLASLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKATPGRLLDHLKNTSSFLYTNLRWIIFDEADRILELGFGKEIKEILDHLATLNEKVNHLAKISLEDPVMIGLDGKRTEPISKIESLGSSDSDEDNEYNEEKNHSKILDTQIGDYNVPTQLIQRYVKVPCGARIVVLLSILKYLSEREASQKIVVSSTCDAVDFHFSLLSEFQFSSYPQSETDVRQMFMGCKMFRLHGNMDQEDRRKTFQTFKTEKSALLFSTDVAARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLAKHGVSLTEYPLLKVLDSFPLRGQTNDIKKFVAIDSHPWVVCLQKALEAFIMSKPKIDKLAKRGFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGKSYQKQQVKRKRFQKQSGVSKKRRKITNIFPPVHLTCNHTSWATEFIPSIAVYELRSTST 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0667 667 PANTHER RNA HELICASE 139 635 - -
Sto3g0667 667 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 355 516 IPR001650 -
Sto3g0667 667 SMART DUF4217_3 542 607 IPR025313 -
Sto3g0667 667 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 129 290 IPR014001 -
Sto3g0667 667 Gene3D - 351 633 IPR027417 -
Sto3g0667 667 MobiDBLite consensus disorder prediction 302 322 - -
Sto3g0667 667 Gene3D - 70 292 IPR027417 -
Sto3g0667 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 489 IPR027417 -
Sto3g0667 667 SMART helicmild6 397 480 IPR001650 -
Sto3g0667 667 CDD SF2_C_DEAD 340 489 - -
Sto3g0667 667 Pfam Helicase conserved C-terminal domain 359 480 IPR001650 -
Sto3g0667 667 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 139 635 - -
Sto3g0667 667 SMART ultradead3 113 303 IPR014001 -
Sto3g0667 667 Pfam DEAD/DEAH box helicase 138 277 IPR011545 GO:0003676|GO:0005524
Sto3g0667 667 Pfam Domain of unknown function (DUF4217) 544 604 IPR025313 -
Sto3g0667 667 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 246 254 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0667 Sto-Chr3 4551470 4561867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0667 139 489 Eukaryotic Initiation Factors Gene Family AT5G11170 24.533 1.07e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0667 K14806 - gmx:100805157 737.643