Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0645 ATGGGGACAAAGAGAAGCCAGAATCCAAGTAAAGAAGTCATGGAAAAGAAGACTAAGAAGAAAGATGCTCTGAACGGTGAGAGCAATAAAGGCACTATTTTtgcctcttgctctttctccagCCTAGGACTTCACCCTACCTTATGCGACGAGCTCCGAGAAAGGATGGGATATGAAGTTCCAACCTTAGTACAAGCTCAAGCCATTCCGGTTATTCTCGCAGGACGTCATGTAAATCGTAGACTCGTTAATGCTGCCACGGGCACCGGGAAGACTATTGCATACTTGGCTCCAATTATTCATCATCTGCAGAATTATGATAATAGAATCCAGCGTTCTGATGGAACATATGAATTAATTGATTTATTGGCAACAGCGTTGGTTCTTGTACCAACGCGTGAGCTATGCCTGCAGGTTTATGAAATTCTTCAAAAGTTATTGCATCGATTTCACTGGATTGTACCTGGATATGTAATGGGTGGTGAAAAAAGGTCAAAGGAAAAAGCCAGGCTGCGTAAAGgCATGTCAATTATTGTAGCAACTCCTGGGCGCCTCTTGGATCACTTGAAGAATACATCATCATTCTTGTACACCAATTTGTGCTGGATAATCTTTGATGAAGCTGATCGGATTCTAGAATTAGGATTtggaaaagaaataaaggaaaTACTAGATCATATAGGTACCACAAACCAAGAGAATGCAGTTCCGAGACAGAATTTGCTCTTATCAGCTACTTTAAATGAAAAGGTTAATCATCTTGCTAAAATCAGTCTAGAGGATCCTGTGATGATTGGTCTTGATGGCAAAAGAACAGAACCAATTTCAAAAATTGAGAGTCTTGGCTCGTCAGATTCTGATGAGGACAATGAATACAATGAAGAGAAGAATCATAGTAAAATCCTGGACTCGCAAATTGGAGATTATAATGTCCCCACACAATTGATTCAGAGATATGTTAAAGTACCTTGTGGAGCGCGTCTTGCTGTGCTTCTTTCCATTCTGAAGTATCTTTCTGAAAGGGAAGCTTCACAAAAGATTGTGGTCTTCTTTTCAACATGCGATGCAGTGGATTTTCACTTTTCACTGCTAAGTGAATTCCAATTTTCATCCTATCCACAATCAGAAACAGACGTTAGACAGATGTTTATGGGATGCAAAATGTTCCGTTTGCATGGAAACATGGATCAGGAGGATCGGAGGAAAACTTTTCAGACTTTTAAGACAGAAAAATCAGCCCTACTGTTTTCCACTGATGTAGCTGCTAGAGGCTTGGATTTTCCAAAAGTTAGATGTATTATACAATATGATTCTCCCGGGGAAGCTACTGAATATGTGCATAGAGTTGGAAGAACTGCTAGGCTGGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAGCCAGTTGAAATAGACTATTTACAGGACTTGGCAAAACATGGTGTATCACTAACAGAGTATCCTCTCCTCAAAGTGTTGGATAGTTTTCCATTACGTGGCCAAAAGAACGACATCAAGAAGTTTGTTGCCATAGACTTACATCCCTGGGTGGTTTGTCTCCAGAAGGCACTTGAAGCCTTCATCATGTCTAAGCCGAAGATAGATAAACTTGCCAAGGGGGGATTTTGCTCTTGGGTACGAGCCTACACAGCCCATCGTGGCGAATTGAAAAGGATATTTATGATCAAGAAACTTCACTTGGGGCATGTAGCAAAAAGCTTTGCACTGAAACAGCAGCCTTCGTTGGAGATAATGGTTGCTCAATTTTGTTTATTGAAGTCATTGATGATCACAAATGGTGAATCTGGATGTGTGCTGCGAGTCCAGATTTTTCCTCCTGTTCATCTCACATGCAATCATACCTCATGGAAGATACTGAGTTTATCCCAAGTATTGCAGTGTATGAACTACGAAGCACCAGTACTTAAAGATCACATGCACAGTATCTTCTACAGATCCAAGTGA 1962 0.3991 MGTKRSQNPSKEVMEKKTKKKDALNGESNKGTIFASCSFSSLGLHPTLCDELRERMGYEVPTLVQAQAIPVILAGRHVNRRLVNAATGTGKTIAYLAPIIHHLQNYDNRIQRSDGTYELIDLLATALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGEKRSKEKARLRKGMSIIVATPGRLLDHLKNTSSFLYTNLCWIIFDEADRILELGFGKEIKEILDHIGTTNQENAVPRQNLLLSATLNEKVNHLAKISLEDPVMIGLDGKRTEPISKIESLGSSDSDEDNEYNEEKNHSKILDSQIGDYNVPTQLIQRYVKVPCGARLAVLLSILKYLSEREASQKIVVFFSTCDAVDFHFSLLSEFQFSSYPQSETDVRQMFMGCKMFRLHGNMDQEDRRKTFQTFKTEKSALLFSTDVAARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLAKHGVSLTEYPLLKVLDSFPLRGQKNDIKKFVAIDLHPWVVCLQKALEAFIMSKPKIDKLAKGGFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLEIMVAQFCLLKSLMITNGESGCVLRVQIFPPVHLTCNHTSWKILSLSQVLQCMNYEAPVLKDHMHSIFYRSK 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0645 653 Pfam Helicase conserved C-terminal domain 333 456 IPR001650 -
Sto3g0645 653 MobiDBLite consensus disorder prediction 1 25 - -
Sto3g0645 653 Gene3D - 2 267 IPR027417 -
Sto3g0645 653 PANTHER RNA HELICASE 21 580 - -
Sto3g0645 653 SMART ultradead3 57 278 IPR014001 -
Sto3g0645 653 CDD DEADc_DDX31 48 266 - -
Sto3g0645 653 CDD SF2_C_DEAD 315 465 - -
Sto3g0645 653 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 66 IPR014014 GO:0003724
Sto3g0645 653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 475 IPR027417 -
Sto3g0645 653 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 204 212 IPR000629 -
Sto3g0645 653 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 21 580 - -
Sto3g0645 653 Gene3D - 325 593 IPR027417 -
Sto3g0645 653 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 503 IPR001650 -
Sto3g0645 653 Pfam DEAD/DEAH box helicase 63 253 IPR011545 GO:0003676|GO:0005524
Sto3g0645 653 MobiDBLite consensus disorder prediction 277 296 - -
Sto3g0645 653 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 72 265 IPR014001 -
Sto3g0645 653 SMART DUF4217_3 518 583 IPR025313 -
Sto3g0645 653 MobiDBLite consensus disorder prediction 9 25 - -
Sto3g0645 653 Pfam Domain of unknown function (DUF4217) 520 580 IPR025313 -
Sto3g0645 653 SMART helicmild6 373 456 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0645 Sto-Chr3 4295636 4300095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0645 22 465 Eukaryotic Initiation Factors Gene Family AT5G11200 25.870 5.98e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0645 K14806 - gmx:100805157 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0645 3 4295636 4300095 Sto3g0645 3 4295636 4300095 ECH