Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0643 ATGTCTGTTCTGGTAACAGGAGAAAGAAAGACAATCAATTCAGAGTTATGGCATGCATGTGCTGGACCATTGGTTTCTTTACCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGCGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGATTTTGTACCTAGTTACCCGAACCTTCCTTCCAAGTTGATTTGCATGCTTCACAATGTTGCACTGCATGCTGATCCGGAAACTGATGAAGTGTATGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAAGCAGCACTACTGGCATCAGACATAGGTCTGAAGCAAAGCCGGCAACCTACTGAGTTCTTCTGCAAAACTCTTACAGCCAGTGATACAAGCACTCATGGTGGATTTTCTGTCCCTCGTAGAGCAGCGGAAAAAATATTTCCACCTCTGGATTTTTCGATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACAATACATGGACATTCAGACATATTTACCGCGGACAACCAAAGAGGCATCTGCTGACTACCGGTTGGAGTGTCTTTGTCAGCACAAAAAGACTATTTGCTGGAGATTCTGTTCTTTTTATAAGAGATGAAAAGCAGCAACTTCTTTTAGGGATAAGGCGTGCTAATAGACAGCAGCCTGCTCTTTCTTCATCAGTTATATCCAGTGACAGCATGCACATAGGAATTCTTGCTGCTGCAGCTCATGCTGCTGCAAATAACAGCCCATTTACCATATTTTACAATCCAAGGGCGAGCCCCTCTGAATTTGTTATTCCGTTGGCCAAATATAATAAAGCCATGTACACCCAAGTCTCCCTTGGAATGAGGTTTAGAATGATGTTTGAGACTGAGGAGTCAGGAGTACGCAGATACATGGGAACAATCACTGGAATCAGTGACTTGGATCCTGTACGATGGAAAAACTCTCAGTGGCGGAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGCAGAGTTTCAATTTGGGACATTGAACCAGTAGTGACTCCTTTCTACATTTGCCCGCCTCCTTTTTTCAGGCCCAAATTCCCAAAGCAACCGGGAATGCCAGATGATGAGTTTGACATGGAAAATGCTTTCAAGAGAGCTATGCCATGGATTGGAGATGACTTTGGCATGAAGGACGCATCAAGTTCAATCTTTCCAGGTTTAAGTTTAGTTCAGTGGATGAGCATGCAGCAGAATAATCAATTTTCTGCTACTCAACCAGGAATGTTCCCATCCATGCTTTCACCCAACTCCCTTCATAATAACCTCGGCACTGATGATCCATCCAAATTATTGAGTTTTCAAGCTCCAGTCCTCTCTGCACCAAATCTTCAGTTTAACAAGCCTAATTTACCAAACCAAGTCAACCAATTGCAACAGGCCACATCATCATGGCCTCAGCAGCAGCTGCAATCATTGTTGCAAACACCCATGACCCAGCTCCAGCAGCCCAGGCAGCAACAGCAACAGCAGCTTCCTGAACCACAAAATCTGTCACATCAGCAGCAACAACAGCCCCAATTGCATCAACAGCGAGCACTTCAACCGCAGCAGCAACAGCAACAGTCGTGTCAACAGGCCATTATAAATAATGGGATGGTTAGTTCCAGCAACATTCCAAATCCGAGTGTGCAGCAACCAGTAACGTACTCTCAGCTTCAGCAGCAGCAATTACTGTCAGGCAGTATCCCACTTCAGCAAAGTATCCAATCAGCAAGCAAGAATGCATTCCCGCTCACAACGTTACCACAGGATTCACAATTTCAACAACAGATGGACCAGCAAGCTAGTCTCTTACAGaggcagcagcagcagcagcaacatTCCTCATTGCAGTTATTGCAACAAAGCTTGTCACAGAGGGCACCACAACAACCACAATTGACTCAACTGCCACAACAGAACCTTTCTGAGCAACAACTGCAGTTACAGTTGCTACAGAAATTGCAGCAACAACAGCAACAGCAAATTCTTTCCCCATCTAGTTCACTTTCACAGCCTCAGTTGCTACAGCAACAGCAGGTTCACCAACAAAACCAGCAACTAACGCAGCTGCCTCTATCTCAGCATCAGCCTCAACAGCTTAGCAACAATGCATTATCCACAGAGAAACTTCTGAACAGCAACAGTTTCTCGTCTTCACCTCTGATGCAATCACAACAGCTTCCTTTGAACCAAACCCAGAACACACAGAAATCACTTGCAAATATCAGGCCTCCTTCTAGTCTCACTGATGGAGAGGCCCCATCATGCTCAACCTCGCCATCAACTAACAACTGCCAGGTGTCTCCACCAAACCTGCTGAAGAGAAATCAACAAGTACCAGCTTCATTAGGGGGTAGCTTGGTTGTTGAGCCCACTAGTAATCTGGTACAGGAGCTTCAGAGTAAGTCTGACATCCAGGTTAAACAGGAGTTGCCAGGTGTAAAAGGGCCTGACCAGCTGAAGTATAAAGGGATGATAACTGATCAGCTGGAAGCTTCTTCTTCTGGAACATCATACTGTCTTGATCCTTGCAGTGTGCAGCCAAACTTCCCACTTCCGAACTTCTGCATGGATGGGGATGTCCAATCTCATCCTAGGAATAATCTACCTTTTACGTCTAATCTTGATGGATTGCCACCTGATACTTTGCTCTCAAGAGGGTATGACTCTCAAAAAGATCTTCAAAATTTGCTCTCTAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCGACTGCTGCCATTAGCTCACAGTCATTTGGTGTGCCAAGCATGCCCTTTAAGCCTGGTTGCTCAGGTGATGTTGCCATCAACGAAACTGGGGTTTTGAATAATAGCTTGTGGACTAACCAGGCTCAGAGGATGCGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGCATTGATGTCACCCGTTACAAGGGATATGATGAACTGCGGCAAGACTTAGCTAGGATGTTTGGTATTGAAGGGCAACTAGAAGATCCTTACAGAACTGACTGGAAACTGGTATATGTGGATCATGAAAATGACATCCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTTCAGAGCATAAAGATACTGTCATCTGCTGAAGTGCAGCAGATGAGCTTGGATGGGGACTTGGGTAATGTTCCAATCTCCAATCAAGCTTGTAGTGGGACAGATAGTGGCAATGCATGGAGGGGACAGTACGAGGATAACTCTGCTGCCTCATTCAATCGATGA 3297 0.4486 MSVLVTGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFVPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKAALLASDIGLKQSRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDEFDMENAFKRAMPWIGDDFGMKDASSSIFPGLSLVQWMSMQQNNQFSATQPGMFPSMLSPNSLHNNLGTDDPSKLLSFQAPVLSAPNLQFNKPNLPNQVNQLQQATSSWPQQQLQSLLQTPMTQLQQPRQQQQQQLPEPQNLSHQQQQQPQLHQQRALQPQQQQQQSCQQAIINNGMVSSSNIPNPSVQQPVTYSQLQQQQLLSGSIPLQQSIQSASKNAFPLTTLPQDSQFQQQMDQQASLLQRQQQQQQHSSLQLLQQSLSQRAPQQPQLTQLPQQNLSEQQLQLQLLQKLQQQQQQQILSPSSSLSQPQLLQQQQVHQQNQQLTQLPLSQHQPQQLSNNALSTEKLLNSNSFSSSPLMQSQQLPLNQTQNTQKSLANIRPPSSLTDGEAPSCSTSPSTNNCQVSPPNLLKRNQQVPASLGGSLVVEPTSNLVQELQSKSDIQVKQELPGVKGPDQLKYKGMITDQLEASSSGTSYCLDPCSVQPNFPLPNFCMDGDVQSHPRNNLPFTSNLDGLPPDTLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTAAISSQSFGVPSMPFKPGCSGDVAINETGVLNNSLWTNQAQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRQDLARMFGIEGQLEDPYRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVPISNQACSGTDSGNAWRGQYEDNSAASFNR 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0643 1098 SUPERFAMILY DNA-binding pseudobarrel domain 108 247 IPR015300 -
Sto3g0643 1098 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 1086 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto3g0643 1098 Gene3D - 281 352 - -
Sto3g0643 1098 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Sto3g0643 1098 MobiDBLite consensus disorder prediction 727 785 - -
Sto3g0643 1098 SMART B3_2 118 220 IPR003340 GO:0003677
Sto3g0643 1098 MobiDBLite consensus disorder prediction 422 446 - -
Sto3g0643 1098 CDD B3_DNA 117 209 IPR003340 GO:0003677
Sto3g0643 1098 Gene3D - 966 1060 - -
Sto3g0643 1098 Pfam Auxin response factor 244 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto3g0643 1098 PANTHER AUXIN RESPONSE FACTOR 19 6 1086 - -
Sto3g0643 1098 SUPERFAMILY CAD & PB1 domains 984 1049 - -
Sto3g0643 1098 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Sto3g0643 1098 ProSiteProfiles PB1 domain profile. 971 1064 IPR000270 GO:0005515
Sto3g0643 1098 Gene3D - 115 219 IPR015300 -
Sto3g0643 1098 Pfam AUX/IAA family 968 1057 IPR033389 -
Sto3g0643 1098 Coils Coil 654 674 - -
Sto3g0643 1098 MobiDBLite consensus disorder prediction 495 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0643 Sto-Chr3 4269291 4275032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0643 7 479 B3 DNA Binding Superfamily AT1G19220 84.567 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto3g0643 AUX_IAA 3.7e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0643 K14486 - gmx:100804628 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0643 3 4269291 4275032 Sto3g0643 3 4269291 4275032 ECH