Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0641 ATGGTGAAGCAGAGCATCGAAAAGCCAGCGGAACGAAGCGATTCTTCTAAGTACAGAGGTGTGCGAAAGAGGAAGTGGGGCAAGTGGGTGTCCGAGATTAGACTGCCTCACAGCAGAGACAGGATTTGGTTGGGCTCCTATGATTCCGCCGAGAAGGCGGCGCGTGCTTTCGACGCCGCCATGTTTTGCTTACGTGGCCGCTCCGGCAACTTTAATTTCCCCGATAACCCCCCGGACATCGCCGGCGGGAGGTCCATGTCCCCTACGCAGATCCAGGCCGCCGCCGCCCGTTTTGCCAATTCGGAGCCCCGGATGGATCAGCCGGTTGAACCCGTGACCAGTGATTTGCCTATGGAGTCTGCGTCACCTTCTCAGTCAGAGGTCACGGTGCAAACGGACAGCGAAGTGACCCAAAACGAATCGTTTCAGGATTTGTTTAGTGTTATCGGGTCGGGTAATCACGAAACCCAATATGAGATATTTGCCGGTTTTGATGATTTGAGCAGTGGATTCTACATACCGGAAATGGACACTCCCATTCCTACCTTTCTTCACAATCTTTCTTTACTTCCCTCTCCTTCCCTTCATAATCTCTCCGGTATGTTGGGGAACAAGCCTCGTCCCATGATCGGGAAGTTGTCGGAGCTCCTAGTCTCCGGCGCGCGTGCGGCGTCGCTTCTGGAGAGCGCCGTGAGTCCTCGAGGTCCGTTGGAGATGATGAATTTGAAGATGCAGTCGCCGAGGGGGTTGAAGAGTTACGACCTGGGCGGCGTGGGTCTGGGGATTGTGGTGGCTCTGGGTAAATCCGGCGAGGGAGGCGGAAGGGAAATCTTGCCCAAATCCGCCGTATGCGGTTCAGGATTGACGGCCCGATCGGACCCCATCCCGGTTCGGGGAATAAAAAACCGAGAGGGGTTTGATGAGATGGATTTGGAAAGCTTGGAGGAGTATACGTATGTGACTTGCCATCTACCTAACAAGGCCTTTACTAAGGTTTACTACGACGGAggccaaaattggagaaatgaatgtaataataacaacaaaattaaaCCCAACAACAACGTTGGTATTGTCCAAAGAAGAAGTAACGGAGAAAGCTTAATTGAAGAAGCAGAACCATGTTTTCCCACCTCGGATTTCCTCAGTTCATGTCACTTGTGCAGAAAGAAACTCGATGGCAAAGACATCTACATGTACAGAGGAGAGAAGGCGTTTTGTAGCCCGGAGTGTCGTTCAAGGCAGATAATGATGGATGAGAGAAAAGAGCAGTGTAGGTCAGAAGCGTCAAGGTCTGTGGAATTATCAAGCTCGCCATATAAAAGAGATCAAATATTTTCCACTGGGATTCTTGCTCTTTGA 1362 0.5007 MVKQSIEKPAERSDSSKYRGVRKRKWGKWVSEIRLPHSRDRIWLGSYDSAEKAARAFDAAMFCLRGRSGNFNFPDNPPDIAGGRSMSPTQIQAAAARFANSEPRMDQPVEPVTSDLPMESASPSQSEVTVQTDSEVTQNESFQDLFSVIGSGNHETQYEIFAGFDDLSSGFYIPEMDTPIPTFLHNLSLLPSPSLHNLSGMLGNKPRPMIGKLSELLVSGARAASLLESAVSPRGPLEMMNLKMQSPRGLKSYDLGGVGLGIVVALGKSGEGGGREILPKSAVCGSGLTARSDPIPVRGIKNREGFDEMDLESLEEYTYVTCHLPNKAFTKVYYDGGQNWRNECNNNNKIKPNNNVGIVQRRSNGESLIEEAEPCFPTSDFLSSCHLCRKKLDGKDIYMYRGEKAFCSPECRSRQIMMDERKEQCRSEASRSVELSSSPYKRDQIFSTGILAL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0641 453 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Sto3g0641 453 MobiDBLite consensus disorder prediction 100 128 - -
Sto3g0641 453 PANTHER OS02G0174800 PROTEIN 201 453 IPR044604 -
Sto3g0641 453 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Sto3g0641 453 PANTHER DUF581 FAMILY PROTEIN 201 453 - -
Sto3g0641 453 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Sto3g0641 453 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Sto3g0641 453 Pfam zinc-finger of the FCS-type, C2-C2 374 422 IPR007650 -
Sto3g0641 453 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Sto3g0641 453 ProSiteProfiles Zinc finger FLZ-type profile. 380 423 IPR007650 -
Sto3g0641 453 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Sto3g0641 453 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700|GO:0006355
Sto3g0641 453 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0641 Sto-Chr3 4244662 4252404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0641 16 168 AP2-EREBP Transcription Factor Family AT1G19210 56.209 4.91e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto3g0641 zf-FLZ 1.5e-22 CL0175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0641 - - gmx:100816402 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0641 3 4244662 4252404 Sto3g0641 3 4244662 4252404 ECH