Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0617 ATGGATGGCTTTTTTCCGGACAAATTTCTGGGTGACATTTTCTTGGATCAAGAAATTGGATTTGGGCAAGAAAGCTTTCATGTTGGATCCACTTCCAAGGACGAAGATCAACCTCTTCCTCCTTTAAACCAGAGCGATTTTCTTCAATACAGTGATTTACCCATAACTGAATTCGGGCCTGAAAGTTCTCATAATGGGTTGAATTCAAATCAAAGTGCTTTTGTTGAATACAGAGAGGTACCCAAAGTGGGATTTGGTGGAGAAAATTGTGAGAATGGAAAAATTAGGAGGAGAATGATTGAGTTCCTGAGAAAAAGTTTAGCTGTGGAGAGAAGCAACACAGCAGAAAGAGAGTACGAAAAAGAACGAGGATTCAGGCATATGATTAACGAGAGGATGAGgaggcagaggcagaggcagTGTTGCTTGGCCCTGCATTCCATCTTACCATATGGAACCAAAAATGATATTAAATCGGTGATTCAAATGGCAGCTAAAGAGATTGAAAGGCTTCAAGCTCGCAGGGATGAATTGCAGAGGCAAAATGTTGAGCTTGAAGCTAAACTTAAAGCTGGAGAGAGTAGTGGTAGTACTAGTACTAGTAGTATAGTTGAATTGAGGGCAGATAATCCCACATCTCCAATTGATTTCATGCTTGATACTATGAAGTTCTTGAAGGGCCTTGGAGTGAATACCAGAAGCATCTCATCAAATTTGTCCCCTCAGGACTTGTCTGCAATCTTAGAGATAGAAACAAAGGTTGGAGATGATGGTGATGTAGAAAGGGCCATTTATGGAGCGGCGAGTGAAAATGGATGGAACATTGGTTCTCATGACTGGGAAGTTTCCAAAAGGCAAAGAATAGGAAATgagaaatga 879 0.3925 MDGFFPDKFLGDIFLDQEIGFGQESFHVGSTSKDEDQPLPPLNQSDFLQYSDLPITEFGPESSHNGLNSNQSAFVEYREVPKVGFGGENCENGKIRRRMIEFLRKSLAVERSNTAEREYEKERGFRHMINERMRRQRQRQCCLALHSILPYGTKNDIKSVIQMAAKEIERLQARRDELQRQNVELEAKLKAGESSGSTSTSSIVELRADNPTSPIDFMLDTMKFLKGLGVNTRSISSNLSPQDLSAILEIETKVGDDGDVERAIYGAASENGWNIGSHDWEVSKRQRIGNEK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0617 292 Gene3D - 122 198 IPR036638 GO:0046983
Sto3g0617 292 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 61 278 IPR044658 -
Sto3g0617 292 Pfam Helix-loop-helix DNA-binding domain 126 172 IPR011598 GO:0046983
Sto3g0617 292 PANTHER TRANSCRIPTION FACTOR BHLH92 61 278 - -
Sto3g0617 292 Coils Coil 154 195 - -
Sto3g0617 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983
Sto3g0617 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 113 183 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0617 71 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 36.022 6.70e-32 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0617 - - gmx:100815874 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0617 3 4093963 4095579 Sto3g0617 3 4093963 4095579 ECH