Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0598 ATGGAGACGGAGCCCTTTGGAGGAGATGTGGTACACAAGGTTCGGTCACGAGTCGGGTCCCAAGTGCCAGAAGCCATTATCATCCGAGCTCTTTCAGAATGTGGATTCGACCCAAATGCCGCTGTCAAGTTCATCAACGATAATCCCGGGTTCTTGGCCCGACCCTTGATGGTGGTGCGGACGATGACTAGCACGGGTGGTGCTCGGGTTTCGGCGCCGATTAAACAAGAGGTATTAGATTTAGATGATTCTGATATTGTAATGAAGGATTCCCAAGAGAAAGCGTTTGGGAAGCAAGATTCTTTGAAACAAGAAATGGGTCCAAATGGTTCTCAGCCATTAACCAATAATGGCAGATTATCATTTGACGATTTTCTTAAAGCTACCAACACAAAAGTTATGACTGACGATGAATATCGCAACTCCCTCATCGGACTAGAGTCATCAACTCAAACTGAACGGGGCGTTTTGGAGTCTGAGAAATTGCTAGAAAAAGTCCCTGTGATTAAGCAAGAGATGTCAAATTTAGATGATTCTGATATTGTAATGAAGGATTCTAAAGAGGAAGTGTTAGGGAAGCAGGATTCTTTGAAACAAGAAATGGGTTCAAATGGTTCTCAACCATTAACCAATAATGGTAGATTATCATTTGACGATTTTCTTACAGCTACCAACACGAAAGTTATGACTGATGATGAATATCGGAAGTCCCTAGTCGAAATAGAGTCATCCACTCAAACTGAAGGGAGGGTTTTGGAGTCTGAGAAACTGGTAGAAAGGGTCCCTGTGAAGAAAGAAGTTGATGACCCTGACTCTGACTGCATGGTATTGGAGAAGTATACGGAAAATAGAATGGTAGTCTATAATGGGATCGAGGATAGAGAATTTGCGGAAGACCCAGAGTGGCTTTTCGTGGGAGGGTCAGTTGTAATTGCACTTTCAACCACCAAAGGCCGAAAACTGGTGGACAATGAGATAGTTCATTTCAATTTCCCTGCTCCAGGTTCAAAACTCAAGTCCAACTCCCAATGGATTGTTCGCGTTTCAACCAAGCGTTTTGGAGAGGTTGGACGCCTTCCAATGGAATGGTCCAAATTTGTTGTTCCGCTAGTGCATTCTTCAAAAGTTAAGGTTCAAGGCCGATGCATAGCCGCACCCACTATTTTACAAATGATGCAAGAAATCATGCTGTATGTAAGCTTTTACATTCACCACTCCATATTTACAGAGTGTGATGGGAATTCTTCTTGGAAACTAGATTCTAAGACTGACATTGACTCTACAATTTATCCCCTTCTCACATTGTTCAAATGGCTAGATATTAATCAATATCAAAAGGCTGAATTTACCCCTGAAGATCTTGATTCTCGGAAGCGTAAGCTTAATATGGAGGGTGGTTCAGAAACTGCATTAGCGTTGCCAATGATGACGCGGGGAAGGAGTAGCCAACAGCGTGGAGAGGAAAACAAGGATGAAGAAGCTGTTTCAGAGTCATATTTAAATAAGCTTGTTGGAGCTGCCGAAGTCTATGACTTGGAGGAGATGGAACCCCCAAGTACGCTGATGTGTGCTTTAAGGCCCTACCAGAAACAAGCTCTTTATTGGATGTCAGAATTAGAGAAGGGAAATGAAGTTGAGGAAGCCACAAAAACGCTTCATCCTTGCTGGGCAGCCTATCGTATATGTGATGGAAGGGCTTCCTCAATTTACGTGAACAACTTCACAGGGGAAGCAACAACAAAGATGCCAACTGCATCACAAATAGCAAGAGGAGGAATTCTAGCAGATGCCATGGGACTTGGAAAGACTGTTATGACTATCGCACTAATACTTGCAAGACCTGGCAGGGTGAGCTCAGAAAACAAAGATGGGGAGAGTTCAAGTAATACTAGCATtacaaagaagaggaagaaaggttCACATATGAGCCCCTCCTTTAAAGCAAAGGGTGGCACTCTTATCGTTTGTCCCATGGCTTTGCTTAGTCAATGGAAGGATGAGCTTGAAACCCATTCAGAACCAGAGAGTATATCTGTTTTTGTTCACTATGGTGGTGATAGAACCAATGACCCTGAGGTGATTGCTGAGTATGATGTGGTCTTGACAACATATGGTCTCCTAACAGCTGCATATAAAAGTGATGGAGAGGATAGCATATACCACAGGATTGATTGGCATAGGGTTGTGCTAGATGAAGCTCATACCATTAAAGCCTCTAGAACCCGGACTGCCCAGTCTGCTTTTGCTTTGTCCTCACGTTGTCGCTGGTGTCTAACTGGAACCCCCCTTCAGAATAATTTAGAAGACGTATTCAGCCTCCTCTGCTTCTTGCATATTGAACCATGGTGCAACTGGCAATGGTGGAATAAGTTGATTCAAAAGCCTTATGAAAATGGTGATCCAAGAGGCCTAAAATTGGTCAAGGCCATTTTGAGGCCACTGATGTTAAGAAGAACAAAGGAAACGAAGGACAAGGAAGGAAGGCCTATACTTGTTCTTCCACCAGCTGACATTCAAGTAATTGAGTGTGAGCAGTCAGAGGCAGAACAGGACTTTTATAACGCCCTCTACAAGAGATCTAAAGTTCAATTTGATGAGTATGTTGCACAAAATAAGGTTCTTCACAACTATGCAAACATCCTTGAGCTACTATTGCGGTTGAGACAGTGTTGTAACCATCCGTTTTTGGTCATGAGTCGAAGCGATTCACAGCAATATGCAGACTTGAATAAGCTTGCAAAAAGATTCTCAGACTCCAATTCAGATTCTGCTTCAAAGCAAACCGTTCCTCCTCCTGCATACATTGAAGAGGTAGTGGAGGGAATCAGGAAAGGCGAAAATATAGAATGCCCTATATGCATGGAGTCGGCAGATGATCCTGTGTTTACACCATGTGCCCATAGGATGTGCAGGGAATGCCTTCTTTCCAGCTGGAGGACTCCAGTGGGAGGTCCATGCCCACTCTGTCGCCAATTGCTCAAGAAAACTGATCTCATTACTTGTCCATCTGAAAGTCCGTTCAGGATTGATGTTGAGAAGAACTGGAAGGAGTCTTCCAAGGTTTCAAAGCTTCTGGAATGCTTGGAAGGCATTGAGAAGTCGAACTCTGGTGAGAAAAGTATTGTCTTTAGCCAATGGACTACATTTCTGGATCTCCTTGAGATTCCATTGAAGAGGAAAGGGATTGGGTATTTAAGATTTGATGGGAAATTGGCTCAAAAGCAGAGGGAGAAAGTTTTGAAGGAATTTAGCCAGACAAACGAGAAAAGGATTCTGTTGATGTCACTGAAAGCTGGTGGTGTGGGCTTGAACTTGACCGCAGCCTCAAATGTATTTTTAATGGATCCATGGTGGAATCCTGCAGTTGAAGAGCAAGCAATTATGAGAATTCATCGTATAGGACAAGAGCGTACTGTCGTTGTTAGAAGATTCATTGTCAAGGAAACAGTGGAAGAACGCATGCAACAAGTGCAGGCCAAGAAGCAGAGGTTGATTGCGGGAGCACTGACTGATGAAGAGGTCAGATCTGCCAGGCTTGAAGAGCTCAAAATGCTCTTCCGTTGA 3564 0.4327 METEPFGGDVVHKVRSRVGSQVPEAIIIRALSECGFDPNAAVKFINDNPGFLARPLMVVRTMTSTGGARVSAPIKQEVLDLDDSDIVMKDSQEKAFGKQDSLKQEMGPNGSQPLTNNGRLSFDDFLKATNTKVMTDDEYRNSLIGLESSTQTERGVLESEKLLEKVPVIKQEMSNLDDSDIVMKDSKEEVLGKQDSLKQEMGSNGSQPLTNNGRLSFDDFLTATNTKVMTDDEYRKSLVEIESSTQTEGRVLESEKLVERVPVKKEVDDPDSDCMVLEKYTENRMVVYNGIEDREFAEDPEWLFVGGSVVIALSTTKGRKLVDNEIVHFNFPAPGSKLKSNSQWIVRVSTKRFGEVGRLPMEWSKFVVPLVHSSKVKVQGRCIAAPTILQMMQEIMLYVSFYIHHSIFTECDGNSSWKLDSKTDIDSTIYPLLTLFKWLDINQYQKAEFTPEDLDSRKRKLNMEGGSETALALPMMTRGRSSQQRGEENKDEEAVSESYLNKLVGAAEVYDLEEMEPPSTLMCALRPYQKQALYWMSELEKGNEVEEATKTLHPCWAAYRICDGRASSIYVNNFTGEATTKMPTASQIARGGILADAMGLGKTVMTIALILARPGRVSSENKDGESSSNTSITKKRKKGSHMSPSFKAKGGTLIVCPMALLSQWKDELETHSEPESISVFVHYGGDRTNDPEVIAEYDVVLTTYGLLTAAYKSDGEDSIYHRIDWHRVVLDEAHTIKASRTRTAQSAFALSSRCRWCLTGTPLQNNLEDVFSLLCFLHIEPWCNWQWWNKLIQKPYENGDPRGLKLVKAILRPLMLRRTKETKDKEGRPILVLPPADIQVIECEQSEAEQDFYNALYKRSKVQFDEYVAQNKVLHNYANILELLLRLRQCCNHPFLVMSRSDSQQYADLNKLAKRFSDSNSDSASKQTVPPPAYIEEVVEGIRKGENIECPICMESADDPVFTPCAHRMCRECLLSSWRTPVGGPCPLCRQLLKKTDLITCPSESPFRIDVEKNWKESSKVSKLLECLEGIEKSNSGEKSIVFSQWTTFLDLLEIPLKRKGIGYLRFDGKLAQKQREKVLKEFSQTNEKRILLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQERTVVVRRFIVKETVEERMQQVQAKKQRLIAGALTDEEVRSARLEELKMLFR 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0598 1187 Coils Coil 1147 1167 - -
Sto3g0598 1187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 943 999 IPR013083 -
Sto3g0598 1187 MobiDBLite consensus disorder prediction 617 646 - -
Sto3g0598 1187 MobiDBLite consensus disorder prediction 104 118 - -
Sto3g0598 1187 Pfam Zinc finger, C3HC4 type (RING finger) 950 989 IPR018957 GO:0046872
Sto3g0598 1187 Pfam SNF2-related domain 528 896 IPR000330 GO:0005524|GO:0140658
Sto3g0598 1187 Gene3D - 575 819 IPR038718 -
Sto3g0598 1187 SUPERFAMILY RING/U-box 937 995 - -
Sto3g0598 1187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 831 1179 IPR027417 -
Sto3g0598 1187 Pfam HIRAN domain 314 399 IPR014905 GO:0003676|GO:0008270|GO:0016818
Sto3g0598 1187 PANTHER DNA REPAIR PROTEIN RAD5B 393 1187 - -
Sto3g0598 1187 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 583 780 IPR014001 -
Sto3g0598 1187 SMART HIRAN_2 303 403 IPR014905 GO:0003676|GO:0008270|GO:0016818
Sto3g0598 1187 Pfam Helicase conserved C-terminal domain 1021 1134 IPR001650 -
Sto3g0598 1187 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1023 1187 IPR001650 -
Sto3g0598 1187 CDD DEXDc_SHPRH-like 525 818 - -
Sto3g0598 1187 CDD RING-HC 950 989 - -
Sto3g0598 1187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 510 818 IPR027417 -
Sto3g0598 1187 MobiDBLite consensus disorder prediction 472 496 - -
Sto3g0598 1187 SMART helicmild6 1051 1134 IPR001650 -
Sto3g0598 1187 ProSiteProfiles Zinc finger RING-type profile. 950 990 IPR001841 -
Sto3g0598 1187 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 393 1187 - -
Sto3g0598 1187 CDD SF2_C_SNF 1018 1145 - -
Sto3g0598 1187 SMART ultradead3 521 788 IPR014001 -
Sto3g0598 1187 Gene3D - 834 1187 IPR027417 -
Sto3g0598 1187 ProSitePatterns Zinc finger RING-type signature. 965 974 IPR017907 -
Sto3g0598 1187 SMART ring_2 950 989 IPR001841 -
Sto3g0598 1187 MobiDBLite consensus disorder prediction 94 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0598 Sto-Chr3 3979402 3985345 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0598 291 1187 RAD5 or RAD16-like Gene Family AT5G43530 71.318 0.0 1353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto3g0598 SNF2_N 7.2e-84 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0598 K15505 - csin:114274303 1470.68