Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0587 ATGGAGAGAAACAGTTTGATCAGCACCAGCCTGAAAGGCCATATCCATGGTACTGTCACCACCAGCAACAACAAGAACCCAATGATAAACGAATCTTGGGACTGCAATAACTCTCAGATCAGCAATGGAGGAGATGAGTACATGAATGGATTCTCGTGGCCTCCAAGATCATACACTTGCAGCTTCTGCAAGAGGGAATTCAGATCTGCTCAAGCACTTGGTGGCCATATGAATGTCCATAGGAGGGACAGAGCCAGACTCAGGCACACAAAGGCTTCGGTGTCCACAGAATTAAAGAATGCAGAATCGTTATCTGGGTTTGGAGAATATGATGGTTTTGCGCAGGAAGATGGGCGCAAAGTATTGAAGAAGGCTGAGATCATTAGGTTGGACTTGGAGATAGGTTTGCTTAGTGATTCCAAGGATGATTTAGATCTGGAGCTTCGATTGGGTACTTACTCTTAG 465 0.4538 MERNSLISTSLKGHIHGTVTTSNNKNPMINESWDCNNSQISNGGDEYMNGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRHTKASVSTELKNAESLSGFGEYDGFAQEDGRKVLKKAEIIRLDLEIGLLSDSKDDLDLELRLGTYS 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0587 154 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Sto3g0587 154 SUPERFAMILY beta-beta-alpha zinc fingers 55 84 IPR036236 -
Sto3g0587 154 PANTHER OS07G0101800 PROTEIN 94 152 - -
Sto3g0587 154 PANTHER OS07G0101800 PROTEIN 20 92 - -
Sto3g0587 154 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Sto3g0587 154 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 94 152 - -
Sto3g0587 154 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 20 92 - -
Sto3g0587 154 Gene3D Classic Zinc Finger 54 110 - -
Sto3g0587 154 Pfam C2H2-type zinc finger 58 82 - -
Sto3g0587 154 SMART c2h2final6 58 80 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0587 Sto-Chr3 3898136 3898870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0587 1 88 C2H2 Transcription Factor Family AT3G23130 55.682 9.23e-26 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto3g0587 zf-C2H2_6 2.4e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0587 - - vvi:100258069 135.191