Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0581 ATGGATTCGTTAGAAGATAATAGCTGCTGGGATTTTCTCGATTACAATCTCATCCATGATTCTCCTCCTGCGCCCACCGATTTCCTTTGGTCCAATCccagTGTGAGTTCGGAAATTGATCTTTCAGGCGGTGCTGTTGCTTGTCAAGAAAACACCCGAAAGAGAGGACGGGTCACTTCATCCTGCAATCCAGGAACAAAAGCTTGTCGGGAGAAAATGCGGAGGGAGAAACTGAATGACAGATTTACCGACTTGAGCTCTGTTTTGGAACCTGGGAGACCTGTGAAGACTGATAAACCTACTATACTTGATGATGCTATCAGAACCTTGAATCAACTTAAAAATGAAGCTCAGGAACTGAAAGAAACAAATGAAAAATTGTTAGAGGAAATAAAATCGTTGAAGGCCGAGAAAAATGAACTTCGTGAAGAGAAATTGGTTCTGAAAGCAGATAAAGAAAGGATTGAGGCACAGTTAAAAGCTTTGCCGATTTCGCCTGCGGGGTTTATGCCTCCTCACGCAGCTGCATATCAAGCTGGGGTCAACAAAATGGCTGTTTTCCCAAGCTATGGTTACATCCCAATGTGGCAATATCTGCCTCCTTCGGCCCGGGATACGTCGCAGGATCATGAACTCAGGCCTCCTGCTGCATAG 654 0.445 MDSLEDNSCWDFLDYNLIHDSPPAPTDFLWSNPSVSSEIDLSGGAVACQENTRKRGRVTSSCNPGTKACREKMRREKLNDRFTDLSSVLEPGRPVKTDKPTILDDAIRTLNQLKNEAQELKETNEKLLEEIKSLKAEKNELREEKLVLKADKERIEAQLKALPISPAGFMPPHAAAYQAGVNKMAVFPSYGYIPMWQYLPPSARDTSQDHELRPPAA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0581 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 113 IPR011598 GO:0046983
Sto3g0581 217 SMART finulus 68 119 IPR011598 GO:0046983
Sto3g0581 217 Gene3D - 66 146 IPR036638 GO:0046983
Sto3g0581 217 Coils Coil 103 158 - -
Sto3g0581 217 PANTHER BHLH TRANSCRIPTION FACTOR 1 217 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Sto3g0581 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 136 IPR036638 GO:0046983
Sto3g0581 217 CDD bHLH_AtILR3_like 67 142 - -
Sto3g0581 217 PANTHER TRANSCRIPTION FACTOR BHLH104 1 217 - -
Sto3g0581 217 Pfam Helix-loop-helix DNA-binding domain 66 113 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0581 Sto-Chr3 3872560 3874655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0581 42 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 67.391 1.40e-78 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto3g0581 HLH 6.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0581 - - gmx:100787583 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0581 3 3872560 3874655 Sto3g0581 3 3872560 3874655 ECH