Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0571 ATggattattcttcttcttccatcttcCACTCTCCCACCTCCGAATCCTCCTTCGGCTCCTACGATTCCTTATTCTCCACCAATTTCGACGACAACACTTACCTTCCCTTCAACGAGAATGACCCCGAGGAGATGCTTCTCTACGGCCTCATTTCCAAGGCCCACACTGACGCCGCCGCCCAACAACAATCTTTCAACTCCGACGAGGTCACCTCCCAGCAGGGCGCCGCTCCTACCACGGACAAGGACAAGAGCTACAGAGGCGTGCGGCGGCGCCCCTGGGGCAAATTCGCCGCCGAGATAAGGGATTCCACCAGGCATGGCATAAGGGTCTGGCTGGGCACGTTCGACAGTGCGGAGGCGGCGGCCTTGGCTTATGACCAGGCGGCCTTCTCCATGCGTGGCTCGGCGGCCATACTGAATTTTCCGGTGGAGAGGGTGAGGGAGTCGCTGAAGGAGATGAACTATGGGTCGGAAGATGGGTGCTCGCCGGTGGTGGCTCTCAAGAGGAAGCACTCCATGAGAAGGAAATTGAGTAGCAAGAAGAACGCGAAGGACGATAGAGATGAGAGAATAATCGACAATGTGGTGGTGTTCGAAGATCTAGGCCCTGATTACTTGGAACAACTATTGATcaAAGATAGAGTCTTTGTTATCCTACAAATTAAATGA 672 0.5238 MDYSSSSIFHSPTSESSFGSYDSLFSTNFDDNTYLPFNENDPEEMLLYGLISKAHTDAAAQQQSFNSDEVTSQQGAAPTTDKDKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPVERVRESLKEMNYGSEDGCSPVVALKRKHSMRRKLSSKKNAKDDRDERIIDNVVVFEDLGPDYLEQLLIKDRVFVILQIK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0571 223 Pfam AP2 domain 85 135 IPR001471 GO:0003700|GO:0006355
Sto3g0571 223 MobiDBLite consensus disorder prediction 61 80 - -
Sto3g0571 223 PANTHER DNA-BINDING DOMAIN 26 213 IPR044808 GO:0003700|GO:0009873
Sto3g0571 223 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
Sto3g0571 223 CDD AP2 84 144 IPR001471 GO:0003700|GO:0006355
Sto3g0571 223 Gene3D AP2/ERF domain 84 145 IPR036955 GO:0003700|GO:0006355
Sto3g0571 223 MobiDBLite consensus disorder prediction 61 87 - -
Sto3g0571 223 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
Sto3g0571 223 SUPERFAMILY DNA-binding domain 85 145 IPR016177 GO:0003677
Sto3g0571 223 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 26 213 - -
Sto3g0571 223 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Sto3g0571 223 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0571 Sto-Chr3 3813796 3814584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0571 35 211 AP2-EREBP Transcription Factor Family AT3G23240 67.039 2.78e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Sto3g0571 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0571 K14516 - jre:109007057 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0571 3 3813796 3814584 Sto3g0571 3 3813796 3814584 ECH