Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0559 ATGGGATTGAAGAAGGGTCCTTGGACTCCTGAGGAAGATCAACTCTTGATCTCTTACATCCACCAACATGGCCATGGAAACTGGCGCGCCCTCCCTAAGCAAGCAGGCCTTTTGAGATGTGGGAAGAGCTGCAGATTGCGGTGGATCAATTATTTAAGGCCAGACATAAAGAGAGGAAACTTCactgtagaagaagaagaaactatCTATAAGCTGCATGACATGCTGGGCAACAGGTGGTCAGCAATTGCAGCAAAATTACCAGGAAGAACAGACAACGAGATAAAAAATGTGTGGCACACACACTTGAAAAAGAGGCTTCAGAAAACTAACCAAGGCATGAACACAAACACCAAAACCAGAGGCTCCAAATCCAGGCCGTCCATCAAACGATCTGATTCCAATTCTAGCACAGTGACCACCCAATCATCATCAGTTTCAGCATGCACTACTTCTAATTCCAGTGATTTCTCATCATCAATACTCACAGTTGGAGAAAGCAATAACCACATGGAAATTCATATGCCCATCAAGAGTGAAGAAGACATAGACTCTCTGGAGGAGATATTGCCTGAAATTGATGAGAGCTTTTGGTCAGAAGCAGGAATGGAAGAGAACAGcccctccaccaccaccaccaccaccaccatgatTAATGATCAATTACCAGTTCATCAATACCCATTTGATTCTATTGAATCGTTCCAACAGGACTATAGCTCAAATTTTGACGATGGAATGGATTTCTGGTATGACATATTCATAAAGACAGGGGACTCGATAGAGCTGCCTCCGTTCTGA 801 0.4032 MGLKKGPWTPEEDQLLISYIHQHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTVEEEETIYKLHDMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLQKTNQGMNTNTKTRGSKSRPSIKRSDSNSSTVTTQSSSVSACTTSNSSDFSSSILTVGESNNHMEIHMPIKSEEDIDSLEEILPEIDESFWSEAGMEENSPSTTTTTTTMINDQLPVHQYPFDSIESFQQDYSSNFDDGMDFWYDIFIKTGDSIELPPF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0559 266 MobiDBLite consensus disorder prediction 107 159 - -
Sto3g0559 266 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 256 - -
Sto3g0559 266 MobiDBLite consensus disorder prediction 108 159 - -
Sto3g0559 266 CDD SANT 60 103 IPR001005 -
Sto3g0559 266 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 256 - -
Sto3g0559 266 Pfam Myb-like DNA-binding domain 58 103 IPR001005 -
Sto3g0559 266 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Sto3g0559 266 Gene3D - 59 135 - -
Sto3g0559 266 CDD SANT 7 52 IPR001005 -
Sto3g0559 266 ProSiteProfiles Myb-like domain profile. 1 52 IPR001005 -
Sto3g0559 266 Gene3D - 2 58 - -
Sto3g0559 266 ProSiteProfiles Myb-like domain profile. 53 103 IPR001005 -
Sto3g0559 266 SMART sant 57 105 IPR001005 -
Sto3g0559 266 SMART sant 4 54 IPR001005 -
Sto3g0559 266 SUPERFAMILY Homeodomain-like 1 99 IPR009057 -
Sto3g0559 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 107 IPR017930 -
Sto3g0559 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0559 Sto-Chr3 3703250 3704793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0559 1 254 MYB Transcription Factor Family AT2G31180 51.163 1.29e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto3g0559 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0559 K09422 - gmx:100794205 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0559 3 3703250 3704793 Sto3g0559 3 3703250 3704793 ECH