Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0548 ATGGATAACGTTATTGGAGGAAAATTCAAGCTCGGGCGGAAGATTGGGAGTGGATCGTTTGGCGAGCTTTATTTGGGCGTTAATGTACAAAGTGGAGAGGAAGTGGGTGTCAAGCTGGAACCTGTGAAGACCAAACATCCTCAACTTCATTATGAGTCAAAATTATATATGCTTCTTCAAGGAGGAACTGGTATACCCCATTTAAAATGGTTTGGAGTTGAGGGTGATTACAATGTCATGGTTATTGATCTTCTTGGCCCAAGTCTAGAAGACTTGTTTAACTATTGCAACCGGAAATTCACTTTAAAAACAGTTCTGATGCTGGCAGATCAGCTAATAAATAGAGTTGAATACATGCACTCCCGGGGTTTTCTTCACCGTGATATAAAGCCTGATAACTTTTTGATGGGTTTGGGACGCAAAGCAAACCAGGTGTACATAATTGATTATGGCCTTGCAAAAAAGTACCGGGATCTCCAAACACATAAGCACATACCATACAGGGAAAACAAGAATCTCACTGGAACTGCTCGATATGCAAGTGTTAACACTCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTGCTAATGTACTTCTTGAGGGGCAGTCTTCCTTGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAGAAATATGACAAGATCAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCCTATGCAAGTCATATCCATCAGAGTTCACATCATATTTCCATTACTGCCGATCGTTGCGATTTGAAGACAAACCTGATTATGCGTACCTTAAGAGACTCTTTCGGGATCTATTTATTCGAGAAGGTTATCAGTTTGATTATGTATTTGATTGGACTATATTAAAATATCCACAAATTGGATCAAGTTCCAGAGCACGACCTAGTGGGAAACCAGTTATGAACCAAGGACCATCTGCAGAGAGATTGGAACGGCCTCCAGTTGGACAAGAGACTCGGGAAAGATTGTCAGGTTCAGTTGAGGCATTTGCTAGAAGAAATGGCTCTGGTCTGCACAGTGATCTCTCTAGGAACAGGTCTTCAGATGGTGTGCCATCTTCCAAAGTAGTGCATCCTGATTCTGAGAGGATTCGTAGTTCTTCCCGTACTGGCAGTGCTTCAAAAAGGCCTGTCGTGTCAAGCAGCCGGCCAAGCTCCTCTGGTGAGCCCAGTGACAGTCGTTCTAGCCGATTGGTCTCAGGCAGTGGCCGTCTTTCTACAACTCAGAGGATTCAGCCTGGTTTTGAGTCCAAATCATCATCATTTACCCGTGCCACAGCATCAAGAGGTGGTCGGGATGATACACTAAGGAGCTTTGAGCTTCTTTCAATTGGCACAGGGAAAAGGAAATGA 1386 0.4336 MDNVIGGKFKLGRKIGSGSFGELYLGVNVQSGEEVGVKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFEDKPDYAYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRARPSGKPVMNQGPSAERLERPPVGQETRERLSGSVEAFARRNGSGLHSDLSRNRSSDGVPSSKVVHPDSERIRSSSRTGSASKRPVVSSSRPSSSGEPSDSRSSRLVSGSGRLSTTQRIQPGFESKSSSFTRATASRGGRDDTLRSFELLSIGTGKRK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0548 461 Gene3D Transferase(Phosphotransferase) domain 1 1 333 - -
Sto3g0548 461 SMART serkin_6 9 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g0548 461 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 448 - -
Sto3g0548 461 PANTHER CASEIN KINASE-RELATED 1 448 - -
Sto3g0548 461 MobiDBLite consensus disorder prediction 349 365 - -
Sto3g0548 461 MobiDBLite consensus disorder prediction 377 439 - -
Sto3g0548 461 Pfam Protein kinase domain 10 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g0548 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Sto3g0548 461 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g0548 461 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Sto3g0548 461 MobiDBLite consensus disorder prediction 300 461 - -
Sto3g0548 461 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0548 Sto-Chr3 3634164 3638742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0548 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 6.55e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Sto3g0548 Pkinase 5.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0548 K08960 - jre:108991207 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0548 3 3634164 3638742 Sto3g0548 3 3634164 3638742 ECH