Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0543 ATGAATTCCGATTCTTCTTCAGCACCTCTGCTTCAACCTCCTCCTCCGAAAGCTAAGCACAGAGACTTCTTCAACCATCTCGAAGCTTACCTTGCCAAGAGAGATGGCGTTGATAAGCTCCTCAAGATTTCCAGGTACGCTACCAAGGTCATCCTCGCCTCCTCGGTTATTCAAGGTAACCCAACCCTATCTCTACGCCTCAAGACCTTCGAATCCAGTGTTGGGGTTAGTCGGAAAGCCTTCAGGCTCGGCAAGTTTGTTCAGGACCTGAACGCTTTGAGAAATTCTCGTTCTGATTCCAAACAGGAATGGGTTCTCTCTATCATTGCCTATGGCGGTGAAGGCTTGTATTACTTTGTCGAACAGTTCATCTGGCTGGCTAAATCGGGTCTTATCGACGCTAAACATTCCAAGAATTTGCAGAAAATTAGTGCTTGGGCTGAGTTCATTGGGTACTTTGGCAGCATCGCTTTGAAGCTTGGGGATTTGAGACATATTTGTGACGATGAAGAAATTTTGAAATCGAGGATTGAAGTTGCGATCACGAAGGGTATTGGGTGTCAAGATGAAGAAGTGAAGTTAAGTAAGTTGAGGGAGAAAAAGTTGATGAAGAAGCTCTCTTTAGTTCAAGATTTGGCTGATGGTTTCATGACATTGGATGATATAATGGATGGCAAAGGACCGTTTTCTAGGCCATTGTTGGTGTCTTCTGCGGGGCTACTGTCAGCACTCATTAGCACTCATAAGAATTGGTCTCAGACCTTCACAGCCGAAAATGGTGACACTCCTATTCCTTATATTCTCTATTTACTTTTTCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCTGGTCAACTATGGCAACGACTATGGAAAGCTCGTGGTCATTGTCGACGTCATTGATCAGAACAGGGCTCTTGTTGATGCTCCTGATATGGTGAGATCCCAAATGAATTTCAAGAGGCTTTCTCTCACTGACATTAAGATTGATATTAAGAGGGTACCCAAGAAGAAAGATCTCCTTCAAGCAATGGAAGCTGCTGATGTTAAGAAGAAGTGGGAGAATAGCTCTTGGGGCAGAAAATTGATTGTTCAGAAGAGGAGAGCAGCCCTCAATGATTTTGATAGGTTTAAGCTAATGTTGACAAAGATCAAGAGGGCAGCTACTGTAAGGCAAGAGCTTGCTAAGCTGAAAAAGAGCGCATCTTAG 1215 0.4412 MNSDSSSAPLLQPPPPKAKHRDFFNHLEAYLAKRDGVDKLLKISRYATKVILASSVIQGNPTLSLRLKTFESSVGVSRKAFRLGKFVQDLNALRNSRSDSKQEWVLSIIAYGGEGLYYFVEQFIWLAKSGLIDAKHSKNLQKISAWAEFIGYFGSIALKLGDLRHICDDEEILKSRIEVAITKGIGCQDEEVKLSKLREKKLMKKLSLVQDLADGFMTLDDIMDGKGPFSRPLLVSSAGLLSALISTHKNWSQTFTAENGDTPIPYILYLLFPFKRYVEIGRVALVNYGNDYGKLVVIVDVIDQNRALVDAPDMVRSQMNFKRLSLTDIKIDIKRVPKKKDLLQAMEAADVKKKWENSSWGRKLIVQKRRAALNDFDRFKLMLTKIKRAATVRQELAKLKKSAS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0543 404 PANTHER PEROXISOMAL MEMBRANE PROTEIN 11A 17 253 - -
Sto3g0543 404 PANTHER PEROXISOMAL BIOGENESIS FACTOR 11 17 253 - -
Sto3g0543 404 Pfam Ribosomal protein L14 316 388 IPR002784 GO:0003735|GO:0005840|GO:0006412
Sto3g0543 404 SUPERFAMILY Translation proteins SH3-like domain 276 364 IPR008991 -
Sto3g0543 404 Pfam Peroxisomal biogenesis factor 11 (PEX11) 25 251 IPR008733 GO:0005779|GO:0016559
Sto3g0543 404 Gene3D - 272 355 IPR014722 -
Sto3g0543 404 Gene3D - 363 398 - -
Sto3g0543 404 CDD KOW_RPL14 278 350 IPR041985 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0543 Sto-Chr3 3601562 3607727 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0543 274 404 Cytoplasmic Ribosomal Protein Gene Family AT4G27090 83.206 1.38e-71 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0543 - - tcc:18591345 355.14