Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0523 ATGGATTCGGATCAAGGTAAGCTTTTTATTGGTGGGATTTCGTGGGATACAACGGAGGACAAGCTCAAGGAGCATTTTAGCAACTATGGTGATGTTATGCACACTTCCGTTATGAGGGAGAAGAACACTGGGAAACCCAGAGGTTTTGGATTTGTCGTGTTTGCAGATCCTTCGATTCTCGATAGGGTTCTCGAGGACAAGCACGTAATCGATGGCAGAACGGTAGATGCCAAGAAGGCCTTCTCCAGAGAGGATCAACAAATTTCTGCCACTTCCAGGGCTGGAAATCCTAACTCTTCTAGAAATTCTGGAAATGGTGGAAATATCaggaccaaaaaaatatttgttggaGGGTTGCCTCCTACCTTGACTGAAGAAAAGTTTCGTCAGTACTTTGAGGCTTATGGCCATGTAACTGATGTAGTAGTCATGTATGACCAGAATACTGGACGACCGCGTGGATTTGGATTTATTTCTTTTGACACTGAAGATGCAGTTGACAGGGTATTGCATAAGCCATTTCATGATTTAAATGGTAAGCAAGTAGAAGTAAAGCGTGCACTTCCTAAGGATGCCAATCCTGGGTATGGGGCATCTGGTGGCAACCAAAATGCATATGATGGTAGGATGGATTCTGGTAGGTATATGCAGCCACAAAGCACTGGGGGTGGATTTCCAGCTTATGGTTCTTCTGGGTATACCGCTCCTGGTTACGGTTATGGTCCTGCTAATAATGGCATTGGTTATGGTGGGTATGGAAGTTATGGTGGTGCAAGTGCTGGATATGGTGGACCTGCTGGTGCAGCCTATGGGAATCCAAATGTTCCTAATGCTGCTTATGCTGGTGCTCCACCAGGTGCCCCAAGAAACTCATGGCCTGCTCAAGCTGCCTCTGGTTATGGCTCTATGGGCTATGGGAATACTGGCGCTGGTCCTGGTTCTGCACCTGCAGGTCAATCACCTAGTGGCGCTGCTGGTTATGGGAATCAAGGTTATGGTTATGGTGGGTATGGTGGATATGGTGGAAGTGATAGTTCTTATGGGAACCCAGGTGTCTATGGTGCTGTTGGAGGGCGTTCTGGGAGTGCCCAAAACAACAATGCTAGTGGTCCAGGAGGGAGTGAGCTGCAAGGGAGTGGTGGCAGCTATAATGGAAGTGGCTATGTTGGTTATGGCAGTGGCTATGGTGGGGCTCAGTCTAGACAAGTCCAACAGCAGTAA 1221 0.4693 MDSDQGKLFIGGISWDTTEDKLKEHFSNYGDVMHTSVMREKNTGKPRGFGFVVFADPSILDRVLEDKHVIDGRTVDAKKAFSREDQQISATSRAGNPNSSRNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLHKPFHDLNGKQVEVKRALPKDANPGYGASGGNQNAYDGRMDSGRYMQPQSTGGGFPAYGSSGYTAPGYGYGPANNGIGYGGYGSYGGASAGYGGPAGAAYGNPNVPNAAYAGAPPGAPRNSWPAQAASGYGSMGYGNTGAGPGSAPAGQSPSGAAGYGNQGYGYGGYGGYGGSDSSYGNPGVYGAVGGRSGSAQNNNASGPGGSELQGSGGSYNGSGYVGYGSGYGGAQSRQVQQQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0523 406 MobiDBLite consensus disorder prediction 351 383 - -
Sto3g0523 406 Gene3D - 4 84 IPR012677 -
Sto3g0523 406 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 404 - -
Sto3g0523 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Sto3g0523 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Sto3g0523 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Sto3g0523 406 MobiDBLite consensus disorder prediction 359 383 - -
Sto3g0523 406 SUPERFAMILY RNA-binding domain, RBD 111 214 IPR035979 GO:0003676
Sto3g0523 406 Gene3D - 85 207 IPR012677 -
Sto3g0523 406 SMART rrm1_1 7 78 IPR000504 GO:0003723
Sto3g0523 406 SMART rrm1_1 113 185 IPR000504 GO:0003723
Sto3g0523 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Sto3g0523 406 MobiDBLite consensus disorder prediction 81 112 - -
Sto3g0523 406 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Sto3g0523 406 MobiDBLite consensus disorder prediction 84 109 - -
Sto3g0523 406 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Sto3g0523 406 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0523 Sto-Chr3 3406193 3408465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0523 8 188 Eukaryotic Initiation Factors Gene Family AT2G23350 24.194 1.08e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0523 K14411 - gmx:100811267 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0523 3 3406193 3408465 Sto3g0523 3 3406193 3408465 ECH