Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0513 TTGGTGCAGGACGAAATCTCGAGCCCCATTAGCGCTCGGATTTTCGAGCTTTGTGACGCTGAATTGTTCCCAGAGACCCTGCAGAATTCTGAGGTTACCTCCAGCTCAAACTGTTACTATGATGAGAATTCCTCCTATACCACAAATATATCTCTAGCTTTAGATGTAGACAATAAGTTCAACCATAGCAATAGCAATACAATCACCACTCCAACAAGCACAACTGCTGccagcaccaccaccaccaccaccacgaacAACAACACAACCAACAATGAAATTGACAATGACATTTCTGCCTCCATAGACTTCTCATCTTCTCCAGCTTTTTCTGTCCCTTCTTTTCTCCCACTCACAACTCAACAGGAACAATTCGATTTCTCTTCCCTCCAGCCTCATGTCACAACACTAGCACCAACTTCAGTTGTGGAAGGCCTCTCTCAGTATCCCACTGACTCTGCTGTTGTACCTCTCATGGGGGCTCCATTAGCATCTGTGTTTGATGAGGATTGCTTGTCTTCTGTCCCTTCTTATGTGCCTTTGAACCCTTCTTCTCCCTCTTGCTCTTATCTCAGCCCTACCATAGGAGCAGCTTATATGCCTCTTGGCCCTCTTAACACTGCCTTATCTACTGATAGTTCTGGGATATTTGGTGGGACACTTCTTCTGGGTTCTGAACTGCAGACACAAGAACTGGATTACCAGGGAGAAAATGGTGCAATTTATTGTCCAGATTCAATTCAGAGGGTGTTTAACCCTCCAGATCTTCAGGCACTTAGTGCTGAAAGTCAGCAACTTGTAGCTGGAGCTGGGAGTTCCACCACTTTGACACAAGAAATATCAAACTTGGAGGACTCCACCTTCAAGGTTGGAAAACTCTCTGTTGAGCAGAGGAAAGAAAAGATTCACAGATacatgaagaagagaaatgagagaAACTtcagcaagaaaatcaagTATGCATGTCGCAAAACTTTGGCGGATAGCCGGCCTCGGGTGAGAGGAAGGTTTGCGAAGAATGATGATTTTGGAGAAACTCATAGACCTGGAAGTAGCAatcatgaagaagatgatgaagaagacGTAgttgtgaaggaagaagatgatatGGTTGATTCCTCAGATATCTTTGCTCATATCAGCGGGGTGAACTCATTCAAATGCAACTATTCCATCCAATCCTGGATTTGA 1191 0.4022 LVQDEISSPISARIFELCDAELFPETLQNSEVTSSSNCYYDENSSYTTNISLALDVDNKFNHSNSNTITTPTSTTAASTTTTTTTNNNTTNNEIDNDISASIDFSSSPAFSVPSFLPLTTQQEQFDFSSLQPHVTTLAPTSVVEGLSQYPTDSAVVPLMGAPLASVFDEDCLSSVPSYVPLNPSSPSCSYLSPTIGAAYMPLGPLNTALSTDSSGIFGGTLLLGSELQTQELDYQGENGAIYCPDSIQRVFNPPDLQALSAESQQLVAGAGSSTTLTQEISNLEDSTFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGETHRPGSSNHEEDDEEDVVVKEEDDMVDSSDIFAHISGVNSFKCNYSIQSWI 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0513 396 MobiDBLite consensus disorder prediction 333 355 - -
Sto3g0513 396 ProSiteProfiles CCT domain profile. 298 340 IPR010402 GO:0005515
Sto3g0513 396 MobiDBLite consensus disorder prediction 64 92 - -
Sto3g0513 396 PANTHER CCT MOTIF FAMILY PROTEIN 3 396 - -
Sto3g0513 396 MobiDBLite consensus disorder prediction 333 362 - -
Sto3g0513 396 Pfam CCT motif 298 340 IPR010402 GO:0005515
Sto3g0513 396 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0513 Sto-Chr3 3369412 3371197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0513 298 356 C2C2-CO-like Transcription Factor Family AT5G57660 45.312 3.72e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto3g0513 CCT 5.1e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0513 - - aprc:113871720 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0513 3 3369412 3371197 Sto3g0513 3 3369412 3371197 ECH