Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0512 ATGAATTGCTCCATCTCCGGCGAGGTACCGGAAGATCCGGTGGTGTCCAAGAAGTCCGGGTTGCTATTTGAGAAGCGTTTAATTGAGAGGCACATATCGGATTATGGAAAGTGTCCAGTTACTGAAGAACCACTTTCTTTGGATGACATTGTTCCTATCAAAACGGGCAAGATAGTAAAACCCAGACCAGTGCAGGCAGCAAGCATCCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGATTGATGCTATCTAATTTTGCATTGGAGCAACAATTACACACAGCAAGGCAAGAGCTAAGTCATGCTCTATATCAGCATGATGCTGCTTGCCGAGTGATTGCAAGactaaaaaaggaaagagatgaagCAAGGTCATTACTTGCTCAGGTAGAAAGGCAGTTACCCACATCTGAACCAGATGCCATTACAACCAATGCTTCTGCCCTGAGCAATGGGAaaagagCTGCTCAGGATGAGGATCTGGCCCCTGGTGGGAAGAAAATGCGTTCTGGAATTACTTCAAATGTAATTTCTGAGCTAACTGATTGTAATGCAGCTCTCTCACAGCAGAGGAAAAAACGCCAGATACCTGCAACTTTGGCTCCTATTGAGGCTTTAGAGGGATATACCCAGATATCTAGTCACCCCTTTCACAAGACAAGCAAACCAGGAATTGTATCTCTTGATATTCTTTATTCTAAGGACATGATTGCCACTGGAGGGGTTGATACAAATGCCGTGATTTTTGACCGGTCATCTGGTCAGATTTTATCCACACTCAGTGGCCACTCAAAAAAGGTTACCAGTGTAAAGTTTGTAGGTCAGGGCGACATGTTCTTGACGGGTTCAGCAGACAAGACAGTTCGGTTGTGGCAAGGGTCAGATGATGGTAACTATAACTGCAGACACATCTTGAAGGATCATACAGCTGAGGTGCAAGCTGTCACTGTCCATGCCACGAATAACTACTTTGTGACTGCTTCACTTGACAACACATGGTGCTTTTATGATTTTTCTTCGGGAACTTGTCTTACTCAGGTTTCAGACTCTGCAGGTTCTTCTGAAGGCTATACATCTGCAGCTTTTCATCCTGATGGTCTTATTCTTGGAACAGGCACTGCAGAAGCTCTCGTCAAGATCTGGGATGTAAAAAGTCAGGCAAATGTTGCTAGATTTGATGGACATGTTGGGGCAGTAACTGCCATATCCTTTTCTGAGAATGGTTACTTCCTTGCGACTGCAGCTCATGATGGTGTAAAGCTTTGGGATCTACGCAAATTGAAAAACTTCCGAAATTTCAGTCTGTATGACCAAGACACTCCGACAAATTcagTGGAGTTCGATCACAGTGGATCTTACCTTGCAATTGCAGGCTCTGATATAAGGATTTTCCAAGTCGCAAATGTGAAATCTGAATGGAATTGTATCAAAACTTTTCCTGATTTATCTGGAACAGGGAAAGCTACCTGTGTGAAATTTGGTCCAGATGCAAAATACATAGCGGTGGGATCAATGGACCGTAATCTTAGAATATTCGGCCTTCCTAGCGAGGATGGTCCCACTGAATAA 1575 0.4317 MNCSISGEVPEDPVVSKKSGLLFEKRLIERHISDYGKCPVTEEPLSLDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQVERQLPTSEPDAITTNASALSNGKRAAQDEDLAPGGKKMRSGITSNVISELTDCNAALSQQRKKRQIPATLAPIEALEGYTQISSHPFHKTSKPGIVSLDILYSKDMIATGGVDTNAVIFDRSSGQILSTLSGHSKKVTSVKFVGQGDMFLTGSADKTVRLWQGSDDGNYNCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYDFSSGTCLTQVSDSAGSSEGYTSAAFHPDGLILGTGTAEALVKIWDVKSQANVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRNFSLYDQDTPTNSVEFDHSGSYLAIAGSDIRIFQVANVKSEWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRIFGLPSEDGPTE 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0512 524 Pfam WD domain, G-beta repeat 256 293 IPR001680 GO:0005515
Sto3g0512 524 Pfam WD domain, G-beta repeat 475 514 IPR001680 GO:0005515
Sto3g0512 524 Pfam WD domain, G-beta repeat 390 425 IPR001680 GO:0005515
Sto3g0512 524 Pfam WD domain, G-beta repeat 302 339 IPR001680 GO:0005515
Sto3g0512 524 Gene3D - 203 516 IPR015943 GO:0005515
Sto3g0512 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Sto3g0512 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Sto3g0512 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 352 387 - -
Sto3g0512 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 434 IPR001680 GO:0005515
Sto3g0512 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Sto3g0512 524 Coils Coil 115 135 - -
Sto3g0512 524 MobiDBLite consensus disorder prediction 136 170 - -
Sto3g0512 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 427 - -
Sto3g0512 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Sto3g0512 524 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Sto3g0512 524 CDD WD40 226 514 - -
Sto3g0512 524 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Sto3g0512 524 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 521 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Sto3g0512 524 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Sto3g0512 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 393 IPR001680 GO:0005515
Sto3g0512 524 SUPERFAMILY WD40 repeat-like 223 514 IPR036322 GO:0005515
Sto3g0512 524 SUPERFAMILY RING/U-box 1 53 - -
Sto3g0512 524 SMART WD40_4 474 515 IPR001680 GO:0005515
Sto3g0512 524 SMART WD40_4 342 384 IPR001680 GO:0005515
Sto3g0512 524 SMART WD40_4 430 467 IPR001680 GO:0005515
Sto3g0512 524 SMART WD40_4 300 339 IPR001680 GO:0005515
Sto3g0512 524 SMART WD40_4 387 425 IPR001680 GO:0005515
Sto3g0512 524 SMART WD40_4 255 294 IPR001680 GO:0005515
Sto3g0512 524 SMART WD40_4 210 252 IPR001680 GO:0005515
Sto3g0512 524 CDD RING-Ubox_PRP19 3 54 - -
Sto3g0512 524 MobiDBLite consensus disorder prediction 136 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0512 Sto-Chr3 3351511 3358509 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0512 1 520 U-box Gene Family AT1G04510 75.962 0.0 829
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0512 K10599 - gmx:100527039 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0512 3 3351511 3358509 Sto3g0512 3 3351511 3358509 ECH