Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0506 ATGGCAGCTTCTGCAGCTGCGGCCATTGGATCTTCATTCTCATCCTCCATCAATACTCTCAAGTGCCTCCGTTCTTCCTCCGAACCTCTCTTCATCAGAATTTCTTCATCTCGCCTCCTACCCTCTCTCGAACCTCTTTCCATCCACCACAAGTTGTGGCCGCCTAGAGTTTCTACGCAACAAGAGCTCGCGCTGGCCGATCAGATTCAAGCGAAGGAtcgggaagaagaaggagagtctCAAGCTGAAGCTGGCATCAGTACTAAGCTCTATTTTGGGAATTTGCCTTACAGTGTTGATAGCGCACAACTTGCTGGCATCATCCAGGAATATGGCAGCCCTGAACTCATTGagGTTCTTTACCACAGGGAAACAGGGAAAAGCAGAGGCTTCGCATTCGTCACAATGACTAGTATCGAAGATTGTAATGCAGTCATACAAAACCTTGATGGAACTGAATTCTTGGGTCGAACCCTGCGGGTGAACTTCTCTGACAAACCTAAACCGAAAGAACCCTTGTACCCTGAAACCCAGCATAAGCTTTTTGTTGGGAACTTGTCGTGGTCAGTGACTTCTGAGAGTCTCACACAAGCTTTTCAAGAATATGGAACGGTGGTAGGAGCTAGGGTGTTGTATGATGGGGAAACGGGAAGGTCTCGAGGTTATGGTTTTGTTTGCTATTCAACCAAATCAGAAATGGATGCTGCTCTTGTATCTTTGAATGGACTGGAACTCGAAGGCCGGGCCATGCGCGTGAGCTTGGCTGAAGGCAAAAGATGA 780 0.4641 MAASAAAAIGSSFSSSINTLKCLRSSSEPLFIRISSSRLLPSLEPLSIHHKLWPPRVSTQQELALADQIQAKDREEEGESQAEAGISTKLYFGNLPYSVDSAQLAGIIQEYGSPELIEVLYHRETGKSRGFAFVTMTSIEDCNAVIQNLDGTEFLGRTLRVNFSDKPKPKEPLYPETQHKLFVGNLSWSVTSESLTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKSEMDAALVSLNGLELEGRAMRVSLAEGKR 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0506 259 PANTHER TRANSFORMER-2-RELATED 64 127 - -
Sto3g0506 259 PANTHER TRANSFORMER-2-RELATED 124 164 - -
Sto3g0506 259 PANTHER TRANSFORMER-2-RELATED 171 259 - -
Sto3g0506 259 Gene3D - 55 168 IPR012677 -
Sto3g0506 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 166 IPR000504 GO:0003723
Sto3g0506 259 Gene3D - 169 259 IPR012677 -
Sto3g0506 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 257 IPR000504 GO:0003723
Sto3g0506 259 SUPERFAMILY RNA-binding domain, RBD 80 171 IPR035979 GO:0003676
Sto3g0506 259 SUPERFAMILY RNA-binding domain, RBD 173 258 IPR035979 GO:0003676
Sto3g0506 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 250 IPR000504 GO:0003723
Sto3g0506 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 160 IPR000504 GO:0003723
Sto3g0506 259 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 171 259 - -
Sto3g0506 259 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 124 164 - -
Sto3g0506 259 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 64 127 - -
Sto3g0506 259 SMART rrm1_1 180 253 IPR000504 GO:0003723
Sto3g0506 259 SMART rrm1_1 89 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0506 Sto-Chr3 3316600 3317789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0506 87 258 Eukaryotic Initiation Factors Gene Family AT3G16380 32.086 7.92e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0506 - - aprc:113871254 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0506 3 3316600 3317789 Sto3g0506 3 3316600 3317789 ECH