Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0492 ATGGATTCTGTCGCACCATTTCAAGACCTTAATATTCTCCCTGACCTACCTACCAGCAGTGTATCAAGTAGCAGCGCCAACGCCAACGCCGTCCCCAAATTGGAGCCGAAGCTCGAGCCGTTGGACGAGCCGTTGTTAGCTCAGCCTCCCCAAGAACCCCAAGATGCGGAGAACACCGTGTTTTCGAATCATGCCCTGGATGGGTTATCTGGGTCTCCGCACGCTAATTTCTGCGAATCGGCGGAACAGGAGAAAGTTTACGCAGACTACTATCGAATTACTGAGCAGTTTAGGACCGCGTTTGGTAAGGGGTCAAAGGGATTCGAAGATGGGGGCGCTTTGGACCCAGATTCGCGAGCAATTGTTCCTGTGCCACAGGAAAACCAGGCTCCTGCTGTCGTCCCTACTCCGAGGCGGACCCCGCGCCGGAAGGAGCTCGTAAGGGTCACTGATCTTCGAATTGAAGACGACAGGTATTTCCGCGACGTTATAAGAAGAACTAGGATGATCTATGATTCGTTGCGCGTTTGGACGTCGGTGGAGGAGGAGAAAAGATGCGATTTGCCTAACATTAAACGGCTGCGAGGTGATTTGAGGGCTTCCTCGTTGATGAGGGAGAATGATTTGTGGCTTAATCGTGAAAGGCGGATAGTGGGTGCGATTCCAGGGATTTACATTGGcgatttattcttttttaggaTGGAAATGGTGGTGGTTGGGCTTCACGGTCAACCACAAGCTGGAATTGATTATCTTCCGGCTAGCCAGAGTACAAACGGTGAGCCAATAGCAACCAGTGTGATAGTTTCTGGTGGatatgaagatgatgaagatggtggCGATGTGATAATCTACACGGGCCATGGAGGGCAAGATAAGAAGAATTCAAGACAAGTTGTTCACCAGAAGTTAGAAGGAGGGAATCTCGCAATGGAAAGAAGCATGCATTATGGAATTGAAGTGCGAGTTATTCGTGGGTTCAGATATCAGGGAAGTGTTTCTcataaaatttatgtttatgaTGGCTTGTATAGAATTATTCAATGCTGGTTTGATGTTGGTAAATCTGGATTTGGAGTTTTCAAGTATAAGCTTGTGAGAATTGATGGTCAACCTGAAATGGGTAGCGCTATTCTTAGATTTGCTCAGACTCTTAGGACTAACCCATTGGTAATCAGGCCCGTCGGTTATCTTAGTCTTGATATTTCTAGCAGAAAGGAGACTGTTCCTGTTCGTCTTTTTAATGACATAGATAAGGATCATGACCCTCTTCGCTATGAGTATCTTCCAAAGACTAATTTTCCACAATTTGTATTTCATCAAACTGGGAATGCTACTGGCTGTGACTGTGTTGATGGTTGTGCTGATAACTGCTTTTGTGCTATGAAGAATGGAGGTACTTTTCCTTATAATCTAAATGGCCTTCTCGTGCGAGGGAAGCCTATACTTTTTGAATGTGGCCCTTTCTGCCGTTGTCCCCCACATTGCCGAAATCGTGTTTCACAGAATGGGATAAAAAATAGATTGGAAGTGTTCAGATCTAGGGAAACTGGTTGGGGAGTTAGGTCACTGGACCTTATTCATGCTGGTGCTTTCATCTGTGAATATACAGGGGTTGTTTTGACTATGGAGCAAGCACAAATTTTGACAATGAATGGTGATTCATTGATATATCCGAGTCGTTTTTCTGATAGGCATGCAGCAGAGTGGGGGGATTTGTCTCGGATATTCTCTGATTATGAGCGTCCATCTTATCCATCCACTCCACCTTTAGATTTTGCTATGGACGTGTCAACAATGAGGAATGTTGCTTGCTATATGAGCCACAGTTCAATTCCTAATGTGTTCGTTCAGTATGTTTTGTATGATCACAATAATTTGATGTTCCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGGGAGCTCAGCCTTGATTATGGGGTCGCTGATGAATGGACAGATGCCAAGCTTTCTATATGTAACTGA 1998 0.4414 MDSVAPFQDLNILPDLPTSSVSSSSANANAVPKLEPKLEPLDEPLLAQPPQEPQDAENTVFSNHALDGLSGSPHANFCESAEQEKVYADYYRITEQFRTAFGKGSKGFEDGGALDPDSRAIVPVPQENQAPAVVPTPRRTPRRKELVRVTDLRIEDDRYFRDVIRRTRMIYDSLRVWTSVEEEKRCDLPNIKRLRGDLRASSLMRENDLWLNRERRIVGAIPGIYIGDLFFFRMEMVVVGLHGQPQAGIDYLPASQSTNGEPIATSVIVSGGYEDDEDGGDVIIYTGHGGQDKKNSRQVVHQKLEGGNLAMERSMHYGIEVRVIRGFRYQGSVSHKIYVYDGLYRIIQCWFDVGKSGFGVFKYKLVRIDGQPEMGSAILRFAQTLRTNPLVIRPVGYLSLDISSRKETVPVRLFNDIDKDHDPLRYEYLPKTNFPQFVFHQTGNATGCDCVDGCADNCFCAMKNGGTFPYNLNGLLVRGKPILFECGPFCRCPPHCRNRVSQNGIKNRLEVFRSRETGWGVRSLDLIHAGAFICEYTGVVLTMEQAQILTMNGDSLIYPSRFSDRHAAEWGDLSRIFSDYERPSYPSTPPLDFAMDVSTMRNVACYMSHSSIPNVFVQYVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTDAKLSICN 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0492 665 Pfam Pre-SET motif 402 499 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Sto3g0492 665 Gene3D SET domain 379 665 IPR046341 -
Sto3g0492 665 Gene3D - 201 378 IPR036987 -
Sto3g0492 665 SUPERFAMILY PUA domain-like 201 382 IPR015947 -
Sto3g0492 665 ProSiteProfiles YDG domain profile. 219 367 IPR003105 -
Sto3g0492 665 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 29 661 - -
Sto3g0492 665 MobiDBLite consensus disorder prediction 13 30 - -
Sto3g0492 665 ProSiteProfiles PUA domain profile. 310 328 - -
Sto3g0492 665 MobiDBLite consensus disorder prediction 1 56 - -
Sto3g0492 665 SMART preset_2 399 491 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Sto3g0492 665 ProSiteProfiles Pre-SET domain profile. 446 504 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Sto3g0492 665 Pfam SAD/SRA domain 218 371 IPR003105 -
Sto3g0492 665 Pfam SET domain 518 651 IPR001214 GO:0005515
Sto3g0492 665 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH9-LIKE 29 661 - -
Sto3g0492 665 SMART set_7 507 657 IPR001214 GO:0005515
Sto3g0492 665 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 69 664 IPR025794 GO:0016571
Sto3g0492 665 ProSiteProfiles SET domain profile. 507 651 IPR001214 GO:0005515
Sto3g0492 665 SMART G9a_1 214 371 IPR003105 -
Sto3g0492 665 SUPERFAMILY SET domain 388 656 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0492 Sto-Chr3 3222060 3224135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0492 138 653 Su(var)3-9 homologs AT5G04940 38.752 1.56e-111 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sto3g0492 SAD_SRA 1.3e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0492 K11420 - pvy:116108901 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0492 3 3222060 3224135 Sto3g0492 3 3222060 3224135 ECH