Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0491 ATGTATTGGGGAGGAGGCATGGCAGGACATATGAGTTGGGGTATGAATATGATTGAGGAAGAAGGTTGGAGGAAAGGTCCTTGGACTGCTGAAGAAGACAGATTGCTGATTGAGTATGTTAGGCTTCATGGTGAAGGAAGATGGAACTCTGTTTCTAGGCTTGCAGGATTGAAAAGAAATGGGAAAAGCTGCAGATTGAGGTGGGTGAATTATCTAAGACCAGACTTGAAGAAGGGCCAGATAACACCACAGGAGGAGAGTATCATTCTAGAGCTGCATGCTAGGTGGGGAAACagGTGGTCAACTATTGCAAGGAGCTTGCCAGGAAGAACTGACAATGAGATAAAGAATTATTGGAGGACCCATTTCAAGAAGAAGGCGAAAAGTCCTCCTGATGCAGCCGAAAAGGCGAAAAATCGTCTCTTGAAGAGGCAGCAATTTCAGCAACAACAGCAGCAATTGCAGCAGCAGCAACAGCAAcaagaacaagaacaagaagtGCAATTCAACTTGGACATTAAAGGGATCATGGCCCTTCTAGAGGACAATGACCACAAAGTGGTGCCTTCTTCTCTATCTCAAATGAGGCAAGAAATGTACCAAAACCCCACAGAATTAGAGCAAGGATACTTCTACTCTATGCTCAATGGAAATGCCTCTGCATCATCACAAGAAGCCTCAAATGATGAAACCTTTTGGGATGGCTTATGGAACTTGGATGATTTTCATGCAAGTTTCAGTGCAGCAAGCAAAGCCAATCTGCACAATTTAGTTGCTCCCTTCTGTTAA 789 0.4297 MYWGGGMAGHMSWGMNMIEEEGWRKGPWTAEEDRLLIEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPPDAAEKAKNRLLKRQQFQQQQQQLQQQQQQQEQEQEVQFNLDIKGIMALLEDNDHKVVPSSLSQMRQEMYQNPTELEQGYFYSMLNGNASASSQEASNDETFWDGLWNLDDFHASFSAASKANLHNLVAPFC 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0491 262 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Sto3g0491 262 SMART sant 24 74 IPR001005 -
Sto3g0491 262 SMART sant 77 125 IPR001005 -
Sto3g0491 262 Gene3D - 82 126 - -
Sto3g0491 262 MobiDBLite consensus disorder prediction 124 158 - -
Sto3g0491 262 CDD SANT 27 72 IPR001005 -
Sto3g0491 262 Gene3D - 25 77 - -
Sto3g0491 262 Pfam Myb-like DNA-binding domain 78 122 IPR001005 -
Sto3g0491 262 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
Sto3g0491 262 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Sto3g0491 262 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Sto3g0491 262 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 247 IPR044676 GO:0003700|GO:0006355|GO:0043565
Sto3g0491 262 Coils Coil 140 167 - -
Sto3g0491 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 72 IPR017930 -
Sto3g0491 262 PANTHER MYB TRANSCRIPTION FACTOR 5 247 - -
Sto3g0491 262 MobiDBLite consensus disorder prediction 124 142 - -
Sto3g0491 262 CDD SANT 82 123 IPR001005 -
Sto3g0491 262 MobiDBLite consensus disorder prediction 143 158 - -
Sto3g0491 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 127 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0491 Sto-Chr3 3196716 3197899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0491 20 262 MYB Transcription Factor Family AT3G24310 57.358 3.86e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto3g0491 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0491 K09422 - gmx:100795981 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0491 3 3196716 3197899 Sto3g0491 3 3196716 3197899 ECH