Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0457 ATGAATGCAGCCCAGATAGATAGAACTATAAAGCTTCTTCCTTTTCGCGTAGCTTCTCATCTGAGTCTTCACTCTTCAGGCTTGCTCTGTCCCGAGCTGCCACGGGTTGGTTCACTCTTTGTCACAGCTCTGACCTTGGCCACTATACTAGCAgGGATGGAGTGCCTTAGTTTTGTTGATGACCTCTTGGATTTCTCATCTGACCTAGGAGAGAAATTTGATGTGGAAGACAAATCCAGGAAAGCCCTTCCTTCAGATAACCCAAAATGCAGTGATCCAGCAACTTTGAACCATGATGATCCTACTTGCCATTCATTTTCCGAGTTTGCAGAAGAAGAGCTGGAGTGGCTATCCAACAAAGATGCATTTCCTGCCATTGAAACATTTGATGACATGCTCTGTAGTCAACCCAACATATCAAAGCACCAAAACACAGTCTCAGTGCTTGAATACAGCGCAAGCAGTACCAACAGTAACAACAGCATTAACAGCAGTGCCCTATTAATCTTCAATCAACACATTAAAGTACCTGTCCGTGCCCGAAGCAGGCGTCAGACTAGGCGTCACCATGGCCTTGTTGACACCTCCAGCCAGCCATTCTGGTGGAGCCAAGAGAGTGAAAAAATTGCCAAAGCAGAAGCAGTGATAACAATCTCATCAATTGGGAGGAAATGCCAGCACTGTGGAGCAGAAAAGACTCCACAATGGCGAGCAGGCCCCCTTGGGCCAAAAACTCTGTGTAATGCATGTGGAGTTAGGTATAAGTCAGGACGGCTTGTGCCTGAGTACCGCCCAGCAAGTAGCCCAACATTTTGCAGTGAGTTGCATTCAAACTCCCATAGGAAGGTAATGGAGATGAGGAACCAGAAGCAAATGGGAATGGTTTTGAATGCCATGGATAAACATTAA 909 0.4609 MNAAQIDRTIKLLPFRVASHLSLHSSGLLCPELPRVGSLFVTALTLATILAGMECLSFVDDLLDFSSDLGEKFDVEDKSRKALPSDNPKCSDPATLNHDDPTCHSFSEFAEEELEWLSNKDAFPAIETFDDMLCSQPNISKHQNTVSVLEYSASSTNSNNSINSSALLIFNQHIKVPVRARSRRQTRRHHGLVDTSSQPFWWSQESEKIAKAEAVITISSIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFCSELHSNSHRKVMEMRNQKQMGMVLNAMDKH 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0457 302 CDD ZnF_GATA 224 271 IPR000679 GO:0006355|GO:0043565
Sto3g0457 302 Gene3D - 219 270 IPR013088 GO:0006355|GO:0008270
Sto3g0457 302 PANTHER GATA TRANSCRIPTION FACTOR 59 291 - -
Sto3g0457 302 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 283 - -
Sto3g0457 302 SMART GATA_3 219 269 IPR000679 GO:0006355|GO:0043565
Sto3g0457 302 PANTHER GATA TRANSCRIPTION FACTOR 1 59 291 - -
Sto3g0457 302 ProSitePatterns GATA-type zinc finger domain. 225 250 IPR000679 GO:0006355|GO:0043565
Sto3g0457 302 Pfam GATA zinc finger 225 258 IPR000679 GO:0006355|GO:0043565
Sto3g0457 302 ProSiteProfiles GATA-type zinc finger domain profile. 219 255 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0457 Sto-Chr3 2980598 2983761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0457 53 293 C2C2-Gata Transcription Factor Family AT3G24050 42.294 9.06e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto3g0457 GATA 1.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0457 - - gmx:100784527 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0457 3 2980598 2983761 Sto3g0457 3 2980598 2983761 ECH