Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0441 ATGCAAGTGACCATCGCTTACAACCATTTTGGAGAGGGACTGATCCAGAGAATGCCAAGAGTGGAAACAGCAGCCAGCCAGTGGAAGGGTTGGAATTGGAGATCAGAGGGAGATCTGTTGCTGAATGGTGCTTATTTCACACCATCAGGAGCTGGAGCTTCAGCCAGCTATGCCAGAGCCTCTAGCTTAGGAGCTAAGTCCTCTTCAATGGTTGGCTCAATGACTTCTGGTGCTGGTGCACTTGGTTGCAGAAGAGGCCGTCAGTGCTAG 270 0.5111 MQVTIAYNHFGEGLIQRMPRVETAASQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTSGAGALGCRRGRQC 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0441 89 PANTHER PECTATE LYASE 18-RELATED 1 21 IPR045032 GO:0030570
Sto3g0441 89 PANTHER PECTATE LYASE 18-RELATED 20 86 IPR045032 GO:0030570
Sto3g0441 89 SUPERFAMILY Pectin lyase-like 1 89 IPR011050 -
Sto3g0441 89 PANTHER PECTATE LYASE 20 86 - -
Sto3g0441 89 PANTHER PECTATE LYASE 1 21 - -
Sto3g0441 89 Gene3D - 21 82 IPR012334 -
Sto3g0441 89 PRINTS Pollen allergen Amb family signature 31 55 IPR018082 -
Sto3g0441 89 PRINTS Pollen allergen Amb family signature 60 83 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0441 Sto-Chr3 2903844 2904484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0441 1 89 Polysaccharide Lyase AT4G13710 53.237 2.55e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0441 K01728 - jre:108995893 144.05