Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0433 ATGGAAGTACGCGGGTGGTATCTCCGACCCGATTTCTTGCCCGACATGAGATCGCGCAAAGTGTTCATCATCATTATCGTCTTCCGCGAGACGCTCTTTGTAATATCTACATCTACATATATGTTTTCTGTTATAGTTGATTCTTACCTTGCTAGTTATATTaacatatCTAGTATCAATGTAAGGTTGTCGTTAATATATGATTCTGATGATTTTTATGTGGAAAAGGATATGGAGGATATGGAAATTGATCAAATTGTGGATGTTCCTGATACTCCTGATAGATTAAATACCAGGCATGGTGGGCGAAAATATGTTTGTGATCCTGATAACTCGAACAGTGGTGAAATGAATAGCTGCATAGCACCCCAAAAACCCAGACCACTTTTCGCACATCTTGGATTGAAGGATAATGCAACTGAAAACAAGAAAGAACATAAAACTAGCACTGGGAACTCTCCTATACCATGCATCCCAGATTCTTCAAGTGCGTCTAGCAATACCTTCGTAGGAAAATGTAAAATAGAATCTAAGACACTTCCATGTTCTAATATATCTGTGGATCGTGGAAAGAGCATTGATCAATCTAGTAATTCTCAAGAAAAGACTGAAAAACAGACGTCATTGCCTCCTCACCTTTTAGCAGCTCCAAGAGTCAGAGGGCAAAAGAGATTGGTACGCAATGGGTGTATCTCACCACATAATATTGCAGCAAGGGCAAAACAATCAGCTGAACAGAATATTCAGAGAACCAATGATGTTGAACAGCGCCATCCTGGGGATGCACTATTTCTTATCAGTAGCAAGGATATAGATACCTTGTACCTAGTAGTTGCATTGTTTTCTAATCTCACCTGGGTCTTATACTTATTTATTCTGGGAAGTAAGGGATTTGGTTGCTTTTGTACACGGGACGCAGGATTGTCTTTGTGTACCCCTATGGTCAATGATGAAGATGCCAATGGTACCAGTAATGCTATCAGAAGTTCACTTGAAAGCTTTGGGGGATCAGGTGGTTGGAGAACTACACGTAACCGCAGGAATATGGATCAGCCCTTGCATGATGTAACCGGGCATCATTCCAGGAGAGGTAATGATTCTGAAAGCTTTATTGGTACTCAATATAGGAACAGAGTGGACAGAAGAAACATTGGGAGTAGTCAAAGCAGTAAGGATGTGCCATATCCTCTAGAAAATCTTGCATCTCATGCAACTTCTCTGATCATTCCGGATGCAGAACATTCTGTTTTGGATACTGAAATCGTTGAGCTGTTCCCTGAAACAACATACACCAACAGAGTGTCTAACAATTTAGATGACATGAATAATGATGATTCAGATGCTCGGGCTAGACAGGTAGAAGCAGATGAAAGGTTGGCCCGTGAACTCCAAGATCAGTTATATCATGAGGAGTATTTTGGTGGTGGAGAGCAGATTGATGAACATTTTGCATGGGAGTTGCAACATGAAGAAGATCTTCTGCATACATCTATTGAGAATCACCATATATCACACCCTAGATGGTTGTCAAGGGAACCCTCAAATAGACAGCTTCGTTCACGGTCTCATCGAAGTCCTACAAATAGAAGGAGAGCTGGGCCTAATGTCTCTCTCTCTAATAGGGCCTCACAGGTGAGGAGTCGCATTTTAAATCGTTCTTCAACAGCAGCCCCAATGAGAGGGAGGCCAACTACAGCTAGAGGGAGTCGCATTCGGTTTCCTGTGGAAATGGACTTTGAcatgAGACTTGATATATTGGAAGCATTAGAAGAAGCAGTTGGGGATATTAGCGACATGGGAGTTTCTGATGACATATTTCATGCACACCGTGATTTCAATGAAAATGATTATGAAATGTTATTGGCTCTTGATGAGAACAATCACCAGCATGCTGGCGCATCTAACAATCAGATCAATAGTTTGCCACAGTCCATTATACAGACTGACAACTTCCAAGAGGTATGTGCCATATGTTTAGAGATCCCAGTCATGGGAGAGACCATTCGCCATCTTCCTTGTTTGCACAAATTTCACAAAGATTGTATCGATCCTTGGCTCCATAGGAGGACATCGTGTCCAGTGTGCAAGTCTTCTATTGCATAA 2103 0.4137 MEVRGWYLRPDFLPDMRSRKVFIIIIVFRETLFVISTSTYMFSVIVDSYLASYINISSINVRLSLIYDSDDFYVEKDMEDMEIDQIVDVPDTPDRLNTRHGGRKYVCDPDNSNSGEMNSCIAPQKPRPLFAHLGLKDNATENKKEHKTSTGNSPIPCIPDSSSASSNTFVGKCKIESKTLPCSNISVDRGKSIDQSSNSQEKTEKQTSLPPHLLAAPRVRGQKRLVRNGCISPHNIAARAKQSAEQNIQRTNDVEQRHPGDALFLISSKDIDTLYLVVALFSNLTWVLYLFILGSKGFGCFCTRDAGLSLCTPMVNDEDANGTSNAIRSSLESFGGSGGWRTTRNRRNMDQPLHDVTGHHSRRGNDSESFIGTQYRNRVDRRNIGSSQSSKDVPYPLENLASHATSLIIPDAEHSVLDTEIVELFPETTYTNRVSNNLDDMNNDDSDARARQVEADERLARELQDQLYHEEYFGGGEQIDEHFAWELQHEEDLLHTSIENHHISHPRWLSREPSNRQLRSRSHRSPTNRRRAGPNVSLSNRASQVRSRILNRSSTAAPMRGRPTTARGSRIRFPVEMDFDMRLDILEALEEAVGDISDMGVSDDIFHAHRDFNENDYEMLLALDENNHQHAGASNNQINSLPQSIIQTDNFQEVCAICLEIPVMGETIRHLPCLHKFHKDCIDPWLHRRTSCPVCKSSIA 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0433 700 SMART ring_2 655 695 IPR001841 -
Sto3g0433 700 MobiDBLite consensus disorder prediction 186 210 - -
Sto3g0433 700 MobiDBLite consensus disorder prediction 149 163 - -
Sto3g0433 700 MobiDBLite consensus disorder prediction 335 372 - -
Sto3g0433 700 MobiDBLite consensus disorder prediction 504 519 - -
Sto3g0433 700 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 178 699 - -
Sto3g0433 700 MobiDBLite consensus disorder prediction 186 207 - -
Sto3g0433 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 700 IPR013083 -
Sto3g0433 700 MobiDBLite consensus disorder prediction 141 163 - -
Sto3g0433 700 MobiDBLite consensus disorder prediction 504 566 - -
Sto3g0433 700 MobiDBLite consensus disorder prediction 347 366 - -
Sto3g0433 700 PANTHER OS11G0582100 PROTEIN 178 699 - -
Sto3g0433 700 MobiDBLite consensus disorder prediction 529 560 - -
Sto3g0433 700 Pfam Ring finger domain 655 696 IPR001841 -
Sto3g0433 700 CDD mRING-H2-C3H2C2D_ZSWM2 655 696 - -
Sto3g0433 700 SUPERFAMILY RING/U-box 645 699 - -
Sto3g0433 700 ProSiteProfiles Zinc finger RING-type profile. 655 696 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0433 Sto-Chr3 2845914 2854569 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0433 140 699 C3H Transcription Factor Family AT1G04790 35.067 2.72e-78 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0433 - - aprc:113872307 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0433 3 2845914 2854569 Sto3g0433 3 2845914 2854569 ECH