Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0406 ATGAGTACTTTTGGATACAAGTCAGATGAGGAACGATCTGTCATTGGAGGAAAGGCAGAAATAGGATTTCTTGATTTTGAGGAAGAGAGATCTGTTTGTAGTTATATCCCTAATGAAGAGGATCCAATTGTCATATCTGTTCCATTTCCGTTTGTGGATGGCAAACCTCAATCAGCGTTTGTTGGAGATACTGCTGTTGATTTAATGACCATTAAAAACACTACCAGTGAACCAGTGGATCTTTGGAGTGTCCATATTTTTGCTTCAAATCCTGAGGACTCTTTCACACTTTCTCTGATGGAACCTCCATCAGCAAATTCAAATGCAGATAGTGTTGGGGGCTTTTTGGAGTCTTTCTCTTTGGAGGACAGGATGCTTCAGCCTGGTGAGATTTTGAAAGTATGGTTGTCTTGCAAAACAAAGGAAATGGGATTGCACACATCGGTTGTGTATTTTGATGCAGGAGATGAAAGAATAGAAAGGTTAGTTTTTCTCTTAGTTGAAGACAAGATATCCCAATCCTTAGCTTCTAAAAAGCCTTTCtcaaaaggaaggaaaaaagaaaaatttgttgTGGATACTTATGTTGCTGGATCACGTCCTGGGAGGAAGGCAAACCGTGCATACAAAAATAGGCTTCCGCGATATGACATCCCCAAGGACATCAGAGATTTGCTTGAGAGCAAGAAGATTCCTGATTCTATTGAAGGAGGTTTGACAAAGAAAAATTATGCTTCTTATTTCAAAACATTAGTGATGATGGAAGAAATACAATTGGAGGAAGACATGAGGAGTTATGATATGGAATGCATAACTATGAGAAAGAGAGCAAATCAATTCTTGTCCATGGTGGTTCCTGGGCTTGCTGAGAGAAGGCCATCATTGGTTCATGGGgattatatttttgccaagcTGGCATCTGAACAGTATGATCACGCCATACCTGCTTATCAGGGATTCGTCCACCGTGTTGAGGCTGATGAAGTATTTTTGAAGTTTGATCCTCAATTTCACTTTTGTCACAAAGATGAAGATCTCTACAACGTTCACTTTACTTATAATAGACTCAATATGAGAAGGTTATATCAAGCAGTTGAGGCTGCCGAAAAGTTAGGAAGAGAGTTCCTATTTCCACAGGTGACATCTAGAAGGAGGAACATTAAAACCCCCCATCTGGTGCCCATATCTGGTACACTTAATGAGAAACAGATGCTTTCTATCAAGAAGATTCTTGGTTGCAGAGGCGCACCGCCTTATGTGATTCATGGCCCACCAGGTACAGGAAAGACTAGCACAGTAGTAGAAGCAATACTCCAACTCTACAAAAATCATAGGAATGCTTTTATTCTTGTTTGTGCACCTTCAAATAGTGCAGCTGACTACGTACTAGAGAAACTCCTTGGTCAAAAGGCTATCAAATTTCAAGATGATGAAATATTCAGGCTCAATGCATCTACCAGGCCTTACGAGGATGTCAAACCTGAAATTATGCGCTTCTGCTTGTTTGATGAATTAATATTCAAGTGTCCTCCAGTCCAAGACCTCATGCGTTATAAGATCATAATATCAACCTATATGAGTGCTTGTCTTCTTTATGCCGAAGATGTTGTCCGAGGTCACTTTTCTCACATTTTTTTGGATGAGGCTGGCCAAGCTTCAGAACCAGAAACCATGATCCCTATATCCCATCTCTGCACAAGGGAGACAGTTGTTGTTCTAGCTGGAGACCCAATGCAATTGGGTCCTGTAATCTATTCCAAAGAAGCAGAAGACTATGGATTGGGAAAATCTTACTTAGAAAGATTGTCCGAAAGCGAGTTATACTCCTTTGGAGATGATAATTATTTAACCAAATTGGTGAGAAACTATAGATGTCATCCACATATTTTACATCTTCCTTCCAAGCTATTCTATGAAGGTGAATTGATTGCATGTAAAGATGACACTACTTCTTTGATGGTGAGTGGAGACATTCTCCCTAACAAGGACTTCCCTGTTCTTTTCCTTGGCATCCAAGGATGTGATGAAAGAGAAGGAAATAACCCATCATGGTTCAACAGAATTGAAGTGAGTAAGGTCATAGAAGTAGTCAAGAGGTTGACAGCTAATGGAAATATGACAGAGGAAGACATTGGGATTATAACACCATATAGGCAACAAGTGCTCAAAATAAAACAGACACTTGAAAGTATCAATATGCCAGAAGTTAAGGTCGGAAGTGTCGAGCAGTTTCAAGGCCAGGAGAAACGGGTTATTATAATATCTACTGTTCGCTCTACAATCAAACATAATGAATTCGATAGAGTGcactgtttaggatttttgagCAATCATCGAAGATTCAATGTGGCAATAACCCGTGCCATATCACTGCTAGTTATAATTGGGAATCCGCACATAATCTCCAAGGACTATTATTGGCACAAACTCCTATGGTATTGTGTGGATAATTCTTCTTATTTGGGTTGTTCTCTTCCTGAAAGAATGGAGCTTGATGATGAGAATAATGGAGATCTTCAAGAAAATTCATTGCCCTCTGAAGATGTGGCGTGGGATCAAGATTCATTCCCAGATGTGCCGTGGGATGAAGATTCATTCCCATCAGAGCTCCCTAAACCTGGTGCTGATGAAGCTGAATGGTCTGATGGTTGGAAATAA 2658 0.3916 MSTFGYKSDEERSVIGGKAEIGFLDFEEERSVCSYIPNEEDPIVISVPFPFVDGKPQSAFVGDTAVDLMTIKNTTSEPVDLWSVHIFASNPEDSFTLSLMEPPSANSNADSVGGFLESFSLEDRMLQPGEILKVWLSCKTKEMGLHTSVVYFDAGDERIERLVFLLVEDKISQSLASKKPFSKGRKKEKFVVDTYVAGSRPGRKANRAYKNRLPRYDIPKDIRDLLESKKIPDSIEGGLTKKNYASYFKTLVMMEEIQLEEDMRSYDMECITMRKRANQFLSMVVPGLAERRPSLVHGDYIFAKLASEQYDHAIPAYQGFVHRVEADEVFLKFDPQFHFCHKDEDLYNVHFTYNRLNMRRLYQAVEAAEKLGREFLFPQVTSRRRNIKTPHLVPISGTLNEKQMLSIKKILGCRGAPPYVIHGPPGTGKTSTVVEAILQLYKNHRNAFILVCAPSNSAADYVLEKLLGQKAIKFQDDEIFRLNASTRPYEDVKPEIMRFCLFDELIFKCPPVQDLMRYKIIISTYMSACLLYAEDVVRGHFSHIFLDEAGQASEPETMIPISHLCTRETVVVLAGDPMQLGPVIYSKEAEDYGLGKSYLERLSESELYSFGDDNYLTKLVRNYRCHPHILHLPSKLFYEGELIACKDDTTSLMVSGDILPNKDFPVLFLGIQGCDEREGNNPSWFNRIEVSKVIEVVKRLTANGNMTEEDIGIITPYRQQVLKIKQTLESINMPEVKVGSVEQFQGQEKRVIIISTVRSTIKHNEFDRVHCLGFLSNHRRFNVAITRAISLLVIIGNPHIISKDYYWHKLLWYCVDNSSYLGCSLPERMELDDENNGDLQENSLPSEDVAWDQDSFPDVPWDEDSFPSELPKPGADEAEWSDGWK 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0406 885 PANTHER DNA2/NAM7 HELICASE FAMILY 8 852 IPR045055 -
Sto3g0406 885 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 810 IPR027417 -
Sto3g0406 885 MobiDBLite consensus disorder prediction 832 885 - -
Sto3g0406 885 CDD DEXXQc_Helz-like 399 624 - -
Sto3g0406 885 Pfam AAA domain 517 587 IPR041677 GO:0004386
Sto3g0406 885 Pfam AAA domain 399 493 IPR041677 GO:0004386
Sto3g0406 885 PANTHER RNA HELICASE SDE3-RELATED 8 852 - -
Sto3g0406 885 Gene3D - 326 609 IPR027417 -
Sto3g0406 885 Gene3D - 624 827 IPR027417 -
Sto3g0406 885 CDD SF1_C_Upf1 625 814 IPR041679 -
Sto3g0406 885 Pfam AAA domain 595 798 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0406 Sto-Chr3 2648214 2652329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0406 398 555 Core DNA Replication Machinery Family AT1G08840 32.716 4.45e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0406 K18422 - gmx:100801796 1365.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0406 3 2648214 2652329 Sto3g0406 3 2648214 2652329 ECH