Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0384 ATGGAACCGGGGATGAGATCAGCTGGTCCTTCTGGGGTTGTGGTGAAGAACAGGAACTCCTCGGGttgtttaattgttaaaaagaaAGCAGATGCGTTGCCTGGTGGGGTCGGTTCTTCAAGTTCCCGGAAGCTGTATGATACGAAAAAGGTGAGGAAAAGACATAGCATGGCCTTAAGTGATTCAGGATCAAGCGATGAATTACTGTTGCCTCCGAGCAGAAGGGTGGGTCCTGAGACTCTGCGAGTCTGCAATGCTTTGACTGGCTTTGAGCGGGGTATTGTTGAAGGGAGTGAATTTGGTAGAAAGAGGGATAGAATGGCGCAACTTAGGCGTAGTGAAGATGGTCTAATTGATAAGAATGGTTTTGAGGAGAGGGAAACAAAACGAAATAGGTTGGATGTCTATGATTTTGATGAATATGACGGTATTCATGTGGAAAATATGCGAAGGAGGCattttgatgataatggaggtGGTTTTGGTGGAGGCAGGTATATGGGATCCATGCATGCAGCTAGAAGTGGCATTGAAAGGGAATTTGATACAGGGTCAAGCAGACCCATTCTTGAAAAGAGAAAGAACTCCTATTATGACAGGGCTAGTGGCATGTATACGGGAAATAATTTAGACCACAGCAGGTTTAAGATGGACAGGGATGGAGCTCAGCTGCCTCTACCCTTGTTGAGAGAGAAGTTTGTTGGCAATGCAGATGAATCCATTAGAGTTCAAGGGAAAAATGGTGTTTTGAAGGTGATGGTCAACAAGAAGAAGGTGGGTGGGACATTAAAACACTACGATCACCATAAGCCTGTAGAAAGCCAACAGAATTTGCGGAGTGAGGGCTCTGCTAAGAGGAATGTTCTGATCCATCCTTCATCATACTCAGAAACAACACTTGTGGAGAAATCAGGTTTAGTTGTTAGGccagataaaaagaaaataatatcaagAAAATCGTTGTCAAGTAAAGAAAGTAAGGGTGATGAATGGGATTCAGAAAACAGTGACACATCGTTGAACCCAGTACATAAAAATACTGAAGCTCGCAAGTCAGTCAAGAGGGCAAGTTCAGAGGACGAACAGACTCCTTTGCACGAAAAGCTCCCTACTACAAAAGTGAAAGAAGGAAAGGTCAGGCGTGGTAGTGGCACAGAGAAACAGAAACTGCGAGAAAAAATAAGGGAGATGCTGCTGGGTGCAGGTTGGACAATAGACTATCGACCTCGAAGGAATAGAGACTATCTAGATGCAGTTTATATTAATCCAGGGGGTACTGCCTACTGGTCAATCATCAAGGCCTATGACGCACTTCAAAAGCAATTGATTGAAGATGATAAGGAGGTCAAGCCTAGGGGAGATGGATCTTCCTTTGCTCTTATTTCTGATGAGGTGCTCAGTCAATTAACAAGGAAAACTCGGAAGAAGATggagaaagaattgaaggagaagCAAAAAGATTGTAGTGAGAGTGATAGTGAAAAGGAACCTCAGGTTAAAAGATCTGCTGGAAACAAGCGTACTATTAATAGCTTTGATAGCGATAGCAACGAAGAGAAATTAAGCTCCTTTATAAAGCAGGGAAATAAGTCAATGAAAAATAAGATAACTGAAAATGCTATTTCTGGTGCTAGCTCTAAGTCTCATGACCCTACTCATCACTCAAATGAGGGCTCAGAAAAACTAGTCTCTGGAGGCGATCCCCATCTTCTACATGGAAGGAGAACTCGAAAACATGGAAGATGTACTTTGCTAGTTCGTAGTTCTAACAAGGGATCAAATTCAGAATCTGATGGTTTTGTTCCATATACGGGAAAACGGACAGTGCTTTCTTGGTTAATTGACTCTGGGACGGTGCAGCTAAGCCAAAAGGTTCAGTATCGTAAGCGAAAGCGAGTAATGCTGGAGGGATGGATAACAAGAGATGGCATTCATTGTGGCTGCTGTAGTAAAATCCTCACAGTTTCAAAGTTTGAGATACATGCAGGAAGCAAATTGCGCCAGCCCTTTCAAAACATATATTTGGATTCCGGAGTTTCACTTCTACAGTGCCAGATAGATGCATGGAATAGACAAGAGAATTCTGAAAAGATCACATTCCACTCAGTAGATATTGATGGTGATGATCCAAATGATGATACTTGTGGTATATGTGGAGACGGCggggatttaatttgttgtGATGGTTGTCCATCTACTTTTCATCAGAACTGTCTGGATATACAGATGCTTCCACCTGGAGAATGGCATTGTCCAAATTGCACCTGCAAATTCTGTGGAATAGCCAGTGGGACTTTTAAAAAAGGAGATGATGTAACTGTGTATGACCTACAAACTTGCAAGTTATGCGAGAAAAAATATCATGAATCTTGCGTGAAGGAGATGGATGCCCTTCCTGATAATGCCAATGTTTCAGGCCCTTTATTTTGTGGAGAAGAGTGCAAAGAGCTTTTTGAGCACCTGAAGAAGTATCTTGGTGCCAAGCATGAACTAGAAGCCGGTTTTTCATGGTCTCTCATTCATAGAACAGATGAAGAGTATGAGGCAGCCACTAGAGGGATTTCTCAAAGGGTAGAATGCAACTCCAAGCTAGCTGTTGCACTGACTGTGATGGATGAGTGTTTTTTACCTGTTGTTGACCGGAGGAGTGGGATCAGTTTAATTCACAATGTACTATATAATAGTGGGTCAAACTTCAATAGGCTGAACTATAGTGGTTTTTACACTGCTGTTTTGGAGCGGGGTGATGATATAATATCTGCAGCATCCATCAGGTTCCATGGGACAAAGCTAGCAGAGATGCCTTTCATTGGAACGCGCCATATATATAGGCGTCAAGGGATGTGCCGCCGGCTTTTTTCTGCCATTGAATCGGCACTCTGCTCTCTGAAGGTTGAGAAACTTGTTATTCCTGCAATTTCCGAACTCGTGCATACATGGACAACAGTTTTTGGCTTCAAGCCTCTTCAGGAATCACTCAGGCAAGATATGAGGTCATTGAATATGATGGTCTTCCCTGGTATAGATATGTTACAGAAGGTACTAGTGAAGCAAGATAAGCTTGAAGGGAAGACAACCACCACAGgTGCTCAGCAaatggaaaagcaagaaaaggTTTCCATTAAGCCCAATATGTCAGATAGACTGGATATGGATTCCTCTGCTCAGAATGATCCTCGTGGAAGTGATGATACTGGTTCAAATCCTGCAAATGAGACAACTGATGAATGCAGCGATGTGGAACTTAATAATCAAGCTTTGGTTGATGGGACTGTATGTTCCAAGTCCCATTCAGGAAATAGATTGACTGAATCAGCTTCAGGTAAATGTGTTTCTCCCTCTAGTACTACTAGCCATGGAGATGTGgagattgaaaataaattagtaTTGGCAACTCCTGTTAAAGAAAAATTCCATCCTTCTCCTAAATGTGAAGTCATTTCGCCAAATGATGCTCCTGATTCTCATGAAAATCCAACTTTGGTTCGGGGAACTGCTTGTTCTAATTCTGATTCAGCAGAAAATCTGGTGGAACCTGTCTCGAACTGGAAATGTCACTCTCCTACTATGAATTGTGATTCATCAGATCTTGAGAAAGTTCAAGTGGTGCATAATGCTATTATGTCTTCTAAAGATGTTGATATGACTGATGCCCGAGAAGTTGATGAAGCTGTTCCTTCTGAGGATTTATCTGAAGAGAATGTTACCAAGGGGATCAATGAAAATATAGATGTTTCTGGTTCTACTCGTCATCGTGCTGATGCAAGTTTCTTGCTAGCCACATCTAGTTTGAATGGTGAAACTGCATATAAAGGAGAAACAAATTTATATGTGGGCACAGAAGTTGCTTCAAATGTAATGCATTCTGATTCAGATGAAAGTAGTCTAAATGTATCTACTGATAGTTCAGAGACAGATTCAGAATAA 3927 0.4072 MEPGMRSAGPSGVVVKNRNSSGCLIVKKKADALPGGVGSSSSRKLYDTKKVRKRHSMALSDSGSSDELLLPPSRRVGPETLRVCNALTGFERGIVEGSEFGRKRDRMAQLRRSEDGLIDKNGFEERETKRNRLDVYDFDEYDGIHVENMRRRHFDDNGGGFGGGRYMGSMHAARSGIEREFDTGSSRPILEKRKNSYYDRASGMYTGNNLDHSRFKMDRDGAQLPLPLLREKFVGNADESIRVQGKNGVLKVMVNKKKVGGTLKHYDHHKPVESQQNLRSEGSAKRNVLIHPSSYSETTLVEKSGLVVRPDKKKIISRKSLSSKESKGDEWDSENSDTSLNPVHKNTEARKSVKRASSEDEQTPLHEKLPTTKVKEGKVRRGSGTEKQKLREKIREMLLGAGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLIEDDKEVKPRGDGSSFALISDEVLSQLTRKTRKKMEKELKEKQKDCSESDSEKEPQVKRSAGNKRTINSFDSDSNEEKLSSFIKQGNKSMKNKITENAISGASSKSHDPTHHSNEGSEKLVSGGDPHLLHGRRTRKHGRCTLLVRSSNKGSNSESDGFVPYTGKRTVLSWLIDSGTVQLSQKVQYRKRKRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLQCQIDAWNRQENSEKITFHSVDIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQNCLDIQMLPPGEWHCPNCTCKFCGIASGTFKKGDDVTVYDLQTCKLCEKKYHESCVKEMDALPDNANVSGPLFCGEECKELFEHLKKYLGAKHELEAGFSWSLIHRTDEEYEAATRGISQRVECNSKLAVALTVMDECFLPVVDRRSGISLIHNVLYNSGSNFNRLNYSGFYTAVLERGDDIISAASIRFHGTKLAEMPFIGTRHIYRRQGMCRRLFSAIESALCSLKVEKLVIPAISELVHTWTTVFGFKPLQESLRQDMRSLNMMVFPGIDMLQKVLVKQDKLEGKTTTTGAQQMEKQEKVSIKPNMSDRLDMDSSAQNDPRGSDDTGSNPANETTDECSDVELNNQALVDGTVCSKSHSGNRLTESASGKCVSPSSTTSHGDVEIENKLVLATPVKEKFHPSPKCEVISPNDAPDSHENPTLVRGTACSNSDSAENLVEPVSNWKCHSPTMNCDSSDLEKVQVVHNAIMSSKDVDMTDAREVDEAVPSEDLSEENVTKGINENIDVSGSTRHRADASFLLATSSLNGETAYKGETNLYVGTEVASNVMHSDSDESSLNVSTDSSETDSE 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0384 1308 Coils Coil 467 494 - -
Sto3g0384 1308 PANTHER PHD FINGER FAMILY PROTEIN 1 1237 - -
Sto3g0384 1308 MobiDBLite consensus disorder prediction 347 388 - -
Sto3g0384 1308 MobiDBLite consensus disorder prediction 318 388 - -
Sto3g0384 1308 MobiDBLite consensus disorder prediction 1286 1308 - -
Sto3g0384 1308 MobiDBLite consensus disorder prediction 318 334 - -
Sto3g0384 1308 MobiDBLite consensus disorder prediction 33 73 - -
Sto3g0384 1308 Pfam PHD-finger 715 757 IPR019787 -
Sto3g0384 1308 SUPERFAMILY FYVE/PHD zinc finger 701 761 IPR011011 -
Sto3g0384 1308 MobiDBLite consensus disorder prediction 476 502 - -
Sto3g0384 1308 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1237 - -
Sto3g0384 1308 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 902 991 IPR016181 -
Sto3g0384 1308 CDD PHD2_CHD_II 715 754 - -
Sto3g0384 1308 MobiDBLite consensus disorder prediction 503 549 - -
Sto3g0384 1308 Pfam Tify domain binding domain 637 687 IPR032308 -
Sto3g0384 1308 SMART PHD_3 714 755 IPR001965 -
Sto3g0384 1308 SMART PHD_3 756 814 IPR001965 -
Sto3g0384 1308 MobiDBLite consensus disorder prediction 268 290 - -
Sto3g0384 1308 MobiDBLite consensus disorder prediction 476 578 - -
Sto3g0384 1308 MobiDBLite consensus disorder prediction 276 290 - -
Sto3g0384 1308 ProSitePatterns Zinc finger PHD-type signature. 715 754 IPR019786 -
Sto3g0384 1308 MobiDBLite consensus disorder prediction 1047 1078 - -
Sto3g0384 1308 MobiDBLite consensus disorder prediction 1023 1039 - -
Sto3g0384 1308 MobiDBLite consensus disorder prediction 1095 1120 - -
Sto3g0384 1308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 772 IPR013083 -
Sto3g0384 1308 ProSiteProfiles Zinc finger PHD-type profile. 712 757 IPR019787 -
Sto3g0384 1308 MobiDBLite consensus disorder prediction 1023 1078 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0384 Sto-Chr3 2542512 2549736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0384 1 1059 PHD Transcription Factor Family AT4G14920 50.046 0.0 949
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto3g0384 TDBD 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0384 - - ccaj:109804483 1659.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0384 3 2542512 2549736 Sto3g0384 3 2542512 2549736 ECH