Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0353 ATGGAGCTCCAAAAGCGCCAAGATCAGAGCCCACCCGAGAGGAAAGGCCAGAAGCGGAAGCTGGAGGATGATTTCGGAGACGAGCGTGAGATCTCGGCGCCTCCCACCGGCGACGCGCGAGATGCCATCCTCGCCGAGGTCACGGCGCAAGTTGAAATCCTCGACTCCAATTTCTCATGGCGGGAAGCCGATCGAGCGGCGGCTAAGCGCGCCACTCACGTCCTCGCCGAGCTTGCCAAGAATGAAGAAGTGGTGAACGTGATAGTTGAAGGAGGCGCTATTCCGGCTTTGGTTAAGCATCTTCAAGCGCCGCCTTCGAGTGAAAACGATCGTGGTCAAAAGCCATTTGAGCACGAGCCAGAACATCAACAACTTATTGTTGACAATGGTGCCTTAAAGCATCTTGTTGATCTGTTAAAGAGACATGAGAATTGCTCTACTTCTCGTGCCATCAATAGTGTCATCCGTAGGGCTGCTGATGCTATCACTAATCTTGCACATGAGAACAGCAGCATTAAAACTCGAGTCAGGATGGAAGGTGGAATTCCACCACTTGTTGAGTTGCTCGAATTTACTGATATGAAAGTGCAAAGAGCAGCTGCGGGCGCGTTGCGAACCCTGGCTTTTAAAAATGACGAGAATAAAAATCAGGTTACTGGCCTTTCCTTAAGGTTGTTTCTTGAAATTAACTTAAATACAATTAAGTCACAGAAAATCATGACTTGGCAGATTGTTGAATGCAATGCTCTTCCAACTCTAATTTTAATGCTCCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTAATCGGAAATCTGGTACACTCATCCCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTGCAACCTGTTATTGGATTACTTAGCCAAAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGTAAGGTCCACATTGTTCAGAGAGGTGCTGTCCGGCCTCTGATAGAGATGCTCCAGTCCCCTGATGTACAACTCAGAGAAATGTCTGCCTTTGCTTTGGGAAGATTGGCGCAGGACACCCATAACCAAGCTGGTATTGCACATAATGGTGGCTTAGTGCCATTACTCAAGCTCCTTGACTCAAAAAATGGGTCTCTGCAACACAACGCTGCTTTTGCCCTTTATGGCCTTGCAGATAATGAGGATAATGTATCTGATTTCATTAGAGTTGGTGGAGTTCAGAGACTTCAGGATGGAGAGTTTATTGTTCAAGCAACAAAAGATTGCGTTGCAAAGACATTGAaaagattagaggagaagattCATGGCCGTGTCCTGAATCATTTGTTATATCTTATGCGAGTTTCAGAAAAGGCTGTCCAAAGACGAGTTGCTTTGGCTCTTGCTCATCTCTGTTCTGCAGATGATCAGAGAACCATATTTATTGATAACAATGGATTGGAATTGCTTATTGGGCTTCTTGGTTCTTCTAGCCCTAAGCAGCAACTAGATGGTGCTGTTGCCTTATGCAAGTTGGCCAACAAGGCCATGACTCTGTCACCAATTGATGCTGCTCCTCCTTCTCCAACACCCCAGGAGAAGGATGCGAGGGACATAGAGATTCCAAATATTAGATGGGAGGTTTTTGAGTTGATGATGAGGTTCATATATACTGGATCAATTGATGTTACACTGGATATTGCCCAAGATCTCCTCCGTGCTGCTGATCAATATCTCTTGGAAGGACTAAAGAGACTCTGTGAGTACACAATAGCACAGGATATATCACTGGAGAATGTGTCAAGTATGTATGAACTTTCAGAAGCATTCAATGCTATATCATTGAGGCATACCTGCATCCTTTTTATCATGGAGCAGTTTGATAAATTGAGTGCCAGACCAGGGTACATCTGA 1905 0.4483 MELQKRQDQSPPERKGQKRKLEDDFGDEREISAPPTGDARDAILAEVTAQVEILDSNFSWREADRAAAKRATHVLAELAKNEEVVNVIVEGGAIPALVKHLQAPPSSENDRGQKPFEHEPEHQQLIVDNGALKHLVDLLKRHENCSTSRAINSVIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFTDMKVQRAAAGALRTLAFKNDENKNQVTGLSLRLFLEINLNTIKSQKIMTWQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAVQRRVALALAHLCSADDQRTIFIDNNGLELLIGLLGSSSPKQQLDGAVALCKLANKAMTLSPIDAAPPSPTPQEKDARDIEIPNIRWEVFELMMRFIYTGSIDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFIMEQFDKLSARPGYI 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0353 634 MobiDBLite consensus disorder prediction 1 40 - -
Sto3g0353 634 MobiDBLite consensus disorder prediction 1 35 - -
Sto3g0353 634 Gene3D - 116 223 IPR011989 -
Sto3g0353 634 Pfam BTB/POZ domain 529 590 IPR000210 GO:0005515
Sto3g0353 634 Pfam Armadillo/beta-catenin-like repeat 176 208 IPR000225 GO:0005515
Sto3g0353 634 Pfam Armadillo/beta-catenin-like repeat 242 276 IPR000225 GO:0005515
Sto3g0353 634 Pfam Armadillo/beta-catenin-like repeat 120 149 IPR000225 GO:0005515
Sto3g0353 634 Pfam Armadillo/beta-catenin-like repeat 315 354 IPR000225 GO:0005515
Sto3g0353 634 Gene3D Potassium Channel Kv1.1; Chain A 514 622 IPR011333 -
Sto3g0353 634 Gene3D - 44 115 IPR011989 -
Sto3g0353 634 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 3 219 IPR044282 -
Sto3g0353 634 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 242 529 IPR044282 -
Sto3g0353 634 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 529 633 IPR044282 -
Sto3g0353 634 Gene3D - 417 513 IPR011989 -
Sto3g0353 634 SUPERFAMILY ARM repeat 441 571 IPR016024 -
Sto3g0353 634 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 367 409 IPR000225 GO:0005515
Sto3g0353 634 SUPERFAMILY POZ domain 528 589 IPR011333 -
Sto3g0353 634 Gene3D - 232 416 IPR011989 -
Sto3g0353 634 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 180 215 IPR000225 GO:0005515
Sto3g0353 634 SMART BTB_4 475 592 IPR000210 GO:0005515
Sto3g0353 634 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 326 368 IPR000225 GO:0005515
Sto3g0353 634 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 248 290 IPR000225 GO:0005515
Sto3g0353 634 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 529 633 - -
Sto3g0353 634 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 242 529 - -
Sto3g0353 634 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 3 219 - -
Sto3g0353 634 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 130 180 IPR000225 GO:0005515
Sto3g0353 634 SUPERFAMILY ARM repeat 63 414 IPR016024 -
Sto3g0353 634 SMART arm_5 471 511 IPR000225 GO:0005515
Sto3g0353 634 SMART arm_5 279 313 IPR000225 GO:0005515
Sto3g0353 634 SMART arm_5 236 277 IPR000225 GO:0005515
Sto3g0353 634 SMART arm_5 356 396 IPR000225 GO:0005515
Sto3g0353 634 SMART arm_5 169 209 IPR000225 GO:0005515
Sto3g0353 634 SMART arm_5 119 167 IPR000225 GO:0005515
Sto3g0353 634 SMART arm_5 315 355 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0353 Sto-Chr3 2326736 2331940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0353 319 491 U-box Gene Family AT5G40140 28.902 2.66e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Sto3g0353 BTB 1.1e-10 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0353 - - vvi:100249437 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0353 3 2326736 2331940 Sto3g0353 3 2326736 2331940 ECH