Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0346 ATGGCTCAACTGCAGAGCCAACAGCAGCAGCAGCCACCCGTCGACCACGCCCAGAAGACCAAGACCCTCATTTGTGCCCTCAACCTTGTCTCCCGTAATCTCCCTTTGCCTCCTGACCTTCTCAATACCGTTTCTTCCATCTATTACGACGCCGAAGATGCTTCTAGCAATGCTCATCACTGCGACGTCCCTGATGCGAGTGCCAGTGGTGCCGGATCTGAGGAGAAACACGTGGATGCGCCCGCCGACAAGGGTTTGGATGATGTAGGGAATTCTAAAGAAGATTTGCTAACAGATCTTGAAGATGCACTGTGGAAACAACGACCAAGTTGTGTCTCGGGTTCCAAATTGAAGGAAGAAAGGGAAAAACGTTACCAAAGTCAGATTCAGCATCGGTTAAATGATCTGGAAGAATTGCCTTCGAGCAGAGGGGAGGACCTGCAGACTAAGTGCCTGCTTGAATTCTATGGACTAAAGCTAGCAGAGTTGCAGAGGAAGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGTTAAATGTGCTTATCCTGACAGGCAATTGTTTGATTGGGGAATGATGCGGTTGCGACGTCCAATGTATGGTGTTGGAGATCCATTTTCCATGGATACTGATGATCAGTTAAGGAAGAAACGGGATGCTGAGAGACTGTCAAAATTAGAAGAGGAGGAAAAGAATCATATAGAgaccagaaaaagaaaatttttcgcaGAAATACTCAATGCCGTCCGTGAGTTCCAATTACAAATTCAAGCTTCCTTGAAACGGAGAAAACAGAGAAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCTACGAGGGCTGAGAAGTTGAGGTTCCAAGCCTTGAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAAAGTAAGAATGAAAGGTTGACTCTGCTTCTTGAAGAAACAAATAAGTTACTGGTAAATTTGGGAGCAGCTGTTCAACGTCAAAAGGACTCAAAACAAGTAGATGGCATTGAGCCCTTGGAAGATTCAGAAGCTGATCTACCAGAGTCAGATGTTTCAAAGAATGGAATATCTAAGGAATCACCTCCTGAAGATGATTCTGATGTGATAGATTCTGATCATAATGGTGATACTAGTGATTTACTAGAAGGTCAACGGCAATACAACTCTGCCATACATTCAATTCAAGAAAAGGTAACTGAGCAACCTTCTATTCTTCAAGGTGGAGAATTAAGACCATATCAGCTAGAAGGGCTTCAGTGGATGCTTTCTTTGTTTAATAACAACCTAAATGGAATTTTGGCTGATGAAATGGGTCTGGGAAAGACAATACAAACAATTTCCCTGATAGCATATCTTATGGAGAACAAGGGTGTGACCGGTCCCCACTTGATTGTGGCACCAAAGGCTGTTCTACCAAATTGGATCAGCGAATTCTCAACATGGGTTCCTAGCATTACAACCGTTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAATTGTCAGGAGAGGGGAAATTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCACTGGTACTACTTGATTGTGGATGAAGGCCACCGGTTGAAGAATCACGAGTGTGCTCTAGCGAGAACCCTTGACTCTGGCTATAACATCCAACGCAGACTGCTGCTGACTGGCACCCCTATTCAGAATAGTTTGCAGGAATTATGGTCCCTGCTTAATTTTCTCCTTCCAAGCATTTTCAATTCAGTTCAAAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGATCGAGTTGATGTCTCTCTAACAGATGAAGAACAGCTATTGATCATTCGGCGTCTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAGAAAGatgaggtggaaaaatatcttCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCGTCATGGCAGAAAGTATATTATCACCAAGTTACTGACTTGGGCAGAGTTGGCTTAGACAATGGTTCTGGGAAATCAAAAAGTCTACAGAACCTGACAATGCAACTCAGAAAGTGTTGCAACCATCCCTACCTCTTTGTGGGAGAACATAATATGTGGAACAAGGATGAGATTGTCAGAGCATCAGGAAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCCGAACTGGGCACAGGGTCCTTCTGTTTTCACAAATGACCCGCCTGATGGATATTCTTGAAATTTATCTGCGACTTCATGATTTCAAGTTTCTTAGACTTGATGGCTCAACAAAAACGGAGGAAAGAGGATCTCTACTGCGACAGTTTAATGCTCCTGACTCTCCATACTTCATGTTTCTTTTGAGCACCCGTGCTGGAGGTCTTGGTCTCAACTTACAAACTGCAGATACTGTTATAATCTTTGATAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGACCGAGCTCATCGCATTGGACAAAAAAAGGAAGTTAGGGTTTTTGTGTTGGTTAGTGTGGGATCAATCGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCTAAAGTCATCCAGGCAGGACTGTTTAACACAACTTCAACAGCTCAGGACAGAAGagaaatgttggaggaaataatGCGTCGAGGTACAAGCTCGCTTGGGACTGATGTACCTAGTGAGAGAGAAATCAACCGCCTTGCAGCTCGATCAGACGAAGAATTTTGGTTATTTGAGAGAATGGATGAAGAGAGAAGGCAAAAGGAGAATTACAGATCTCGTCTCATGGAAGAACATGAAGTGCCAGATTGGGTATACTCTGCAGCAGTTAATAAGGATGATAAGGTCAAAGGTTTTGATGCTAGTAATGTTACTGGAAagcgaaaaagaaaagaagtggtATATGCTGATACGTTAAGTGATCTACAATGGATGAAAGCTGTGGAGAATGGGGAAGACGTATCAAAGCTTTCAGTTAAAGGGAGAAGAAGAGACTACCTGCCATCTGACAGCAACACAAATGCTAGTGATAATGTGGCAGCAGAAGAAAGTTTATCAGATTTACAGAATGAAAGCTTCTCCATTGCAAAAGAGAGATCAACTGAAGATTCTTTCCTAGTGACCCCTGGTCCTCCCCCGAAGAGACTCAAGCTTGAAGGATTAAATACACAGAAACATGAATACGAGGACATCAGAAGAAGTGGTTTGAATGAGCAAGTGTTTTCCTGGAATACCCATAGAAAGAAGAGATCTAGCAATCTTTCCCAGAGTTCATCATTATCTGATTCCAGAGGGCAGAATTCAAATGGAAGGGCAAACTGGAGCTGA 3378 0.4201 MAQLQSQQQQQPPVDHAQKTKTLICALNLVSRNLPLPPDLLNTVSSIYYDAEDASSNAHHCDVPDASASGAGSEEKHVDAPADKGLDDVGNSKEDLLTDLEDALWKQRPSCVSGSKLKEEREKRYQSQIQHRLNDLEELPSSRGEDLQTKCLLEFYGLKLAELQRKVRSDVSSEYWLNVKCAYPDRQLFDWGMMRLRRPMYGVGDPFSMDTDDQLRKKRDAERLSKLEEEEKNHIETRKRKFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQVDGIEPLEDSEADLPESDVSKNGISKESPPEDDSDVIDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWISEFSTWVPSITTVLYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWYYLIVDEGHRLKNHECALARTLDSGYNIQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSSWQKVYYHQVTDLGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGEHNMWNKDEIVRASGKFELLDRLLPKLRRTGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGSLLRQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFERMDEERRQKENYRSRLMEEHEVPDWVYSAAVNKDDKVKGFDASNVTGKRKRKEVVYADTLSDLQWMKAVENGEDVSKLSVKGRRRDYLPSDSNTNASDNVAAEESLSDLQNESFSIAKERSTEDSFLVTPGPPPKRLKLEGLNTQKHEYEDIRRSGLNEQVFSWNTHRKKRSSNLSQSSSLSDSRGQNSNGRANWS 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0346 1125 Pfam Snf2-ATP coupling, chromatin remodelling complex 929 995 IPR029295 GO:0042393
Sto3g0346 1125 Pfam Helicase conserved C-terminal domain 727 840 IPR001650 -
Sto3g0346 1125 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 730 897 IPR001650 -
Sto3g0346 1125 Pfam SNF2-related domain 420 708 IPR000330 GO:0005524|GO:0140658
Sto3g0346 1125 Gene3D - 385 641 IPR038718 -
Sto3g0346 1125 PANTHER ATP-DEPENDENT HELICASE BRM 9 1074 - -
Sto3g0346 1125 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 429 595 IPR014001 -
Sto3g0346 1125 MobiDBLite consensus disorder prediction 57 89 - -
Sto3g0346 1125 Coils Coil 931 951 - -
Sto3g0346 1125 MobiDBLite consensus disorder prediction 364 386 - -
Sto3g0346 1125 MobiDBLite consensus disorder prediction 334 387 - -
Sto3g0346 1125 MobiDBLite consensus disorder prediction 1049 1072 - -
Sto3g0346 1125 SMART helicmild6 756 840 IPR001650 -
Sto3g0346 1125 Gene3D - 648 947 IPR027417 -
Sto3g0346 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 894 IPR027417 -
Sto3g0346 1125 SMART SnAC_2 933 995 IPR029295 GO:0042393
Sto3g0346 1125 CDD SF2_C_SNF 718 851 - -
Sto3g0346 1125 MobiDBLite consensus disorder prediction 1093 1125 - -
Sto3g0346 1125 SMART ultradead3 413 606 IPR014001 -
Sto3g0346 1125 MobiDBLite consensus disorder prediction 1018 1036 - -
Sto3g0346 1125 PANTHER SNF2/RAD54 HELICASE FAMILY 9 1074 - -
Sto3g0346 1125 MobiDBLite consensus disorder prediction 1014 1036 - -
Sto3g0346 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 642 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0346 Sto-Chr3 2277092 2285768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0346 399 867 RAD5 or RAD16-like Gene Family AT1G02670 26.157 7.41e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto3g0346 SNF2_N 9.7e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0346 - - gmx:100786280 1800.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0346 3 2277092 2285768 Sto3g0346 3 2277092 2285768 ECH