Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0340 ATGCAAGAATTTCTGGGTTCAGTTCGCCGATCCTTGGTTTTCAGGAGCCCGGCTGGGGAAGATGGAGGGTTCGGTGTTGGCGGTCTGGTTGATAAGATTGGGTCCAGCATTCGAAAATCACGAATTGGGCTCTTCTCTCAACCACGGATCAGGGCTCTGCCGCCGGTTCCCAAGGATAACGTGCCTTCGATCCGGTGGCGGAAGGGTGAGTTGATTGGTTGCGGTGCCTTTGGTCGAGTCTATATGGGAATGAACCTAGATTCCGGGGAGCTTATTGCTGTTAAGCAGGTTTTAATCGCCGCCAGTAGTGCTTCTAAAGAGAAAACACAGGCTCATATTTGGGAGCTTGAAGAAGAAGTGAAGCTTCTGAAGAATCTTAAACATCCAAATATTGTTagATACTTGGGAACTGCTAGAGAGGAGGATTCCTTGAATATTCTGCTGGAATTTGTACCTGGTGGATCTATCTCATCACTCTTGGGGAAATTTGGATCCTTTCCAGAGTCTGTTATAAAAATGTATACAAAACAACTTTTACTGGGCCTTGAATACCTTCACAGCAATGGAATTATTCACAGGGATATTAAGGGTGCAAACATTCTCGTTGATAATAAAGGATGCATTAAACTCGCAGACTTTGGTGCATCCAAGAAAGTTGTTGAGCTGGCTACAATAAATGGTGCAAAATCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTGCAGACAGGACATAGCTTTTCTGCTGATATTTGGAGTGTTGGATGCACTGTGATAGAGATGGCCACAGGGAAGCCTCCATGGAGCCAACAGTATCAGGAGGTTGCTGCTCTTTTTCATATCGGCACAACTAAATCTCATCCACCAATACCAGAACATCTTTCTGTTGAGGCAAAGGATTTTTTGTTGAAATGCTTACAGAAGGAACCGGATTTAAGGTCTTCTGCATCAGACTTGTTACAGCATCCATTTGTCACCTGCGAGTATCAGGAAGTTAATCCCATAGTAAGAAGTTCGGTTGTGGAATCTTGCAAGCAGATGGCAACATCTGGGACAAACTCTAAAAACTTTTTGGATTCTGTCAGGGGAGGTGGCCTCAAAGATGTTTGTCAGATGGATAGCATACGATGCTCAATTGTATATCCTGATACTTGTTCCTACCAAGGAGCAAGCAATTATAATGATGACATGTGTCAGATAGATGACAAAGATGATCTTTTTATTGCAGCATCAGTAAATTCTAAATCTCTCTTCTCATCAGATGATGTAAAAAGTTTCAATCCTATGTGTGAACCTATGGATGACTGGCCCTGCAAATTTGATGAAAATCTAAATTCTGAGAGAAGCAGAACAAGCCTATCTCCTGAGCAGACAATTAATAAGACTATCCAAAGCTCTGAAGCATCTCTGAAGATGGAGAATGATTTTTCCTTTCCAAGTGAACCTATAGgagctgatgatgatgatgaagttaCTGAGTCAAAAATTAGAGATTTTCTGGACGAAAAAGCTTTCGATTTGAAGAAGCTCCAAACTCCTCTTTATGAAGAATTCATTAGCATATCGAATGCAGCTGTTACTCCAGCACCTGTATCTAAGGCGCACAGTGAAGTTGTTTCAGATGTGTATATGACGCTAAAGAGCAGGTCACCTAGTCAGGCTAGCAGACGGTTCTCAGTGGTTGGTGGTCCCAGTGTTGCAAGGCAGGGGAGTCATAACAAAAACCAATCAAAATTTAGTTATGCAAATAGTCGACCTTTGCAGGAAATCCATCCATCTGAGCTTAATGAATCGAAGGAGACCCTTCACAATGCTCAGCTGGGATCATTTAGTGCTAGCTCAAGCTTCTCTGAGAGACAAAGGAAATGGAAAGAAGAGCTTGTTGAAGAGCTCGAGAGGAAGCGAGAGATGATGCGTCAGTCAGGCTTTGGAGGGAAGATTATGTCCCCAAATGATCGCAATTTTCAAAAACAGACGGATCGGATACGCTTTGCATTTCCAGGCTAG 2016 0.4236 MQEFLGSVRRSLVFRSPAGEDGGFGVGGLVDKIGSSIRKSRIGLFSQPRIRALPPVPKDNVPSIRWRKGELIGCGAFGRVYMGMNLDSGELIAVKQVLIAASSASKEKTQAHIWELEEEVKLLKNLKHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIKMYTKQLLLGLEYLHSNGIIHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEHLSVEAKDFLLKCLQKEPDLRSSASDLLQHPFVTCEYQEVNPIVRSSVVESCKQMATSGTNSKNFLDSVRGGGLKDVCQMDSIRCSIVYPDTCSYQGASNYNDDMCQIDDKDDLFIAASVNSKSLFSSDDVKSFNPMCEPMDDWPCKFDENLNSERSRTSLSPEQTINKTIQSSEASLKMENDFSFPSEPIGADDDDEVTESKIRDFLDEKAFDLKKLQTPLYEEFISISNAAVTPAPVSKAHSEVVSDVYMTLKSRSPSQASRRFSVVGGPSVARQGSHNKNQSKFSYANSRPLQEIHPSELNESKETLHNAQLGSFSASSSFSERQRKWKEELVEELERKREMMRQSGFGGKIMSPNDRNFQKQTDRIRFAFPG 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0340 671 ProSiteProfiles Protein kinase domain profile. 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g0340 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Sto3g0340 671 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 50 561 - -
Sto3g0340 671 Pfam Protein kinase domain 67 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g0340 671 SMART serkin_6 66 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g0340 671 Gene3D Transferase(Phosphotransferase) domain 1 65 363 - -
Sto3g0340 671 PANTHER MAP KINASE KINASE KINASE 50 561 - -
Sto3g0340 671 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Sto3g0340 671 MobiDBLite consensus disorder prediction 569 589 - -
Sto3g0340 671 Coils Coil 106 126 - -
Sto3g0340 671 CDD STKc_MAPKKK 65 328 - -
Sto3g0340 671 MobiDBLite consensus disorder prediction 639 671 - -
Sto3g0340 671 Coils Coil 623 644 - -
Sto3g0340 671 MobiDBLite consensus disorder prediction 566 589 - -
Sto3g0340 671 SUPERFAMILY Protein kinase-like (PK-like) 65 329 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0340 Sto-Chr3 2225601 2231430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0340 1 649 MAP Kinase Kinase Kinase AT3G06030 59.488 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Sto3g0340 Pkinase 7.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0340 - K20606 jre:109005872 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0340 3 2225601 2231430 Sto3g0340 3 2225601 2231430 ECH