Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0335 ATGTCAGATAGAGGTGGAAGAGGagaagacgaagatgatgaaGAGGTGAAACTATCCATTGATGGGTGCACAGTGAAGGGGGTGACTTTGTGCTctgaaatatttatttgttttataatgacTTCGGTAACAGAAGAGATGGAAGAGATTGGATATGTCATGCCTACAGATGTCCAGAGGCAAGCATTGCCTTCTCTTCTGTCTGGTCGTGATTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACACTTACATACCTGCTTCTGATCTATTCTGTAATAAACACCACAAAATCTGCTGTGCAAGCTCTTGTTGTCGTGCCTACCCGTGAGCTTGGCATGCAAGTTGCTAAAGTTGCAAGGGTCTTGGCAGCAAGGCCAACAGAGATTGAGGGGGAGCAGAAGTTGTGTACCATCATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCAATGATAGTGGTAGCGACAGTGGCAAGTTTGTGCCAAATGCTTGAAAGACAATCTATAAAGCTTGAAACTCTGCGAGTGCTGGTAGTTGATGAGGTTGACTTTATTTTCAATTCTTCAAAGCAAGTCAGTTCTCTTCGAAAGCTTTtgacttcatattcatcatgcAATAACCGCCaaacagtttttgccagtgcATCTATACCACAGCACAGACGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGAGTGATGTGGTCCATATTCACGTCAGTCCAGTTGAGCCCATGCCATCACGCTTACATCATAGATTTATAGTATGTCGTAACAAACAGAGACACCAAACTCTGTTATCTTTGATACAATCTGATGCACCCGAGTCCGGCATTATATTTGTTGGTGAGCAGTCTGAGAAGTCAAAAAGGGCTGGAAATGCTCCTTCAACATCCCTGCTGATTGACTTTCTGAAGACTTCATATCAAGGATCTTTAGATATCCTCCTTCTTGAGGAAGACATGAATTTCAATTCACGAGCAGTTTCTCTGTTGGAGGTAAGGAAAGGAGGAGGGTATCTTCTTGTAGCGACAGATATAGCTGCCAGAGGAGTTGACCTTCCAGAAATGTCACACATATACAACTTTGATCTGCCTAGGACCGCCATCGATTATCTTCATCGGGCTGGCAGGACTTGTAGGAAACCCTTTTCTGACATGAAATGTACTGTTACCAGTATTATAGTTCCAGAGGAGCGCTTTGTTCTCCAGAAATATGAAAATGAGTTGATGTTTAACTGTGAAGAGCTTACATCATAA 1296 0.4074 MSDRGGRGEDEDDEEVKLSIDGCTVKGVTLCSEIFICFIMTSVTEEMEEIGYVMPTDVQRQALPSLLSGRDCILHAQTGSGKTLTYLLLIYSVINTTKSAVQALVVVPTRELGMQVAKVARVLAARPTEIEGEQKLCTIMALLDGGTLRRHKSWLKAEPPMIVVATVASLCQMLERQSIKLETLRVLVVDEVDFIFNSSKQVSSLRKLLTSYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVVHIHVSPVEPMPSRLHHRFIVCRNKQRHQTLLSLIQSDAPESGIIFVGEQSEKSKRAGNAPSTSLLIDFLKTSYQGSLDILLLEEDMNFNSRAVSLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDMKCTVTSIIVPEERFVLQKYENELMFNCEELTS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0335 431 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 33 430 - -
Sto3g0335 431 Gene3D - 36 243 IPR027417 -
Sto3g0335 431 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 274 431 IPR001650 -
Sto3g0335 431 Pfam Helicase conserved C-terminal domain 278 393 IPR001650 -
Sto3g0335 431 Gene3D - 258 429 IPR027417 -
Sto3g0335 431 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 33 430 - -
Sto3g0335 431 SMART ultradead3 51 265 IPR014001 -
Sto3g0335 431 Pfam DEAD/DEAH box helicase 56 229 IPR011545 GO:0003676|GO:0005524
Sto3g0335 431 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 245 IPR014001 -
Sto3g0335 431 SMART helicmild6 311 395 IPR001650 -
Sto3g0335 431 CDD DEADc 43 238 - -
Sto3g0335 431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 397 IPR027417 -
Sto3g0335 431 CDD SF2_C_DEAD 262 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0335 Sto-Chr3 2206679 2212197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0335 51 414 Eukaryotic Initiation Factors Gene Family AT3G13920 27.346 8.34e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0335 - - ahf:112763379 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0335 3 2206679 2212197 Sto3g0335 3 2206679 2212197 ECH