Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0327 ATGTCTCACATAACTGTTGAAAGGAACAGGCGTAGACAGATGAATGATCATCTCAAAGTTTTAAGGACCTTGACCCCTTGTTTCTATATCaaaaggGGAGATCAGGCATCTATAATAGGGGGAGTAATAGAGTTCATAAAGGAGTTACAACAAGTTGTTGAAGCACTGGAATccaagaaaagaaggaaaagtataAGCCCTAGCCCTACTAGTCCCAGTCCCACAACTGTTCTTAATCACCATGCTTCCTcatcattaaataataataataataagcaaGTAATAGTGGGATCAACCAGATGCAACTCATCAGTAGCAGATGTACAAGTCAAAATCTCAGGCTCCAATGTGATAGTGAAAGTGATCTCCCACAAGATTCCAGGTCAACTTGCCAAGATCATCACTCTTTTCGAAACCCTTTCCTTTCAAGTCCTTCATCTCAACATCAGTAGCATGGACGATACTGTGCTCTACCAGCTTCTTGTTCAGATAGGACTGGAATGTCAAGTAAGTCTGGAGGAACTAGCAACGCAAGTGCAACAAACCTTCTCCTCAGCCTCTGATGCCGTTACCACTATATAG 582 0.39 MSHITVERNRRRQMNDHLKVLRTLTPCFYIKRGDQASIIGGVIEFIKELQQVVEALESKKRRKSISPSPTSPSPTTVLNHHASSSLNNNNNKQVIVGSTRCNSSVADVQVKISGSNVIVKVISHKIPGQLAKIITLFETLSFQVLHLNISSMDDTVLYQLLVQIGLECQVSLEELATQVQQTFSSASDAVTTI 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0327 193 Pfam Helix-loop-helix DNA-binding domain 2 50 IPR011598 GO:0046983
Sto3g0327 193 PANTHER TRANSCRIPTION FACTOR FAMA 1 186 IPR044283 GO:0003700|GO:0010052
Sto3g0327 193 MobiDBLite consensus disorder prediction 65 89 - -
Sto3g0327 193 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Sto3g0327 193 SMART finulus 4 55 IPR011598 GO:0046983
Sto3g0327 193 MobiDBLite consensus disorder prediction 60 89 - -
Sto3g0327 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 68 IPR036638 GO:0046983
Sto3g0327 193 PANTHER TRANSCRIPTION FACTOR MUTE 1 186 - -
Sto3g0327 193 Coils Coil 46 66 - -
Sto3g0327 193 Gene3D - 1 64 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0327 Sto-Chr3 2134929 2136291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0327 1 192 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 58.824 3.02e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto3g0327 HLH 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0327 - - atr:18440568 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0327 3 2134929 2136291 Sto3g0327 3 2134929 2136291 ECH