Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0323 ATGGGAAATTTCTGGAGCGGCAGAAGAAGACACAATTACTTTCATTACCCTCCAccgcctcctcctcctcatcaccATCATCTTCCACCTCCGTACTATTATTCTGCCGAATcccatcctcctcctcctccaccgcCTCCTTCGCAAGGCTATTTCATCACCAATACTTACGTCACTCCCCCTCCTCTGCCTGCACCGCCGCTGCCGCCGACATCTCACCCTCAAGCCCATTCCTTTTCTTACCCAAATGGGTATAGCAATTGCCCCAACTATGGCAATTCTATGACGGGTCGGTATCAGTACCAACCTTATTATGTGAATCAGGGTACTAGTGGTTGGCCTGCAATTCGACCTACTGCTGGTCCTGCCAATCCTCCTCCACCCTATGTTGATCATCAAGCCGCCAAGAAGGTCAAGAATGATGTCAATGTGCATAAAGATACTTTGCGGCTCGAGGTAGATGAGCGCAATCCTGACCACCACTTGGTTTCATTCGTTTTCGACGCCTTATATGATGGCAGCATTACTATCTTCTACTTTGCCAAGGAAGTAGAAACATGCAAGTTTATTCCTCTGTTTCCTGAAGTTGAGCCAGTCAGAATCCCCTTTCATAAGGGAGCTGGTCAAAATTTTTGTCAGACTTCAGGAACTGGCATTGATTTGGGCTTCTTTGCGTTGGATGATCTCTCAAAACCATCAGAGGGAGAAGATGTCTTTCCCCTTATAATATGTGCTGAAACATATTCAAGAACTCCTTCAGCAGATGAAAACCTCAGTGAATCCACGCCAGATGTATCCCCTAACATGCAGATTACTCAAGCTGTTCTAGAAAAAAATGGTAGTGGTTCTTTCCAGGTAAAAGTAGTTAGGCAAATTTTGTGGATTGATGGGGCCCGTTATGAATTAAGAGAGCTATATGGAATTGGAAGCTCTACTGCAGCAGATTTCAATGACAGTGATCCTGGGAAGGAGTGTGTAATATGCATGACCGAACCAAAGGACACTGCTGTCTTACCTTGTCGACATATGTGCATGTGCAGTGAGTGTGCCAAAGCTTTGAGGCTTCAGTCAAATAAATGCCCTATATGCCGTCAATCTATCGAGGAACTTATAGAGATCAAGATAAATAATAGCAACCAATGA 1143 0.4252 MGNFWSGRRRHNYFHYPPPPPPPHHHHLPPPYYYSAESHPPPPPPPPSQGYFITNTYVTPPPLPAPPLPPTSHPQAHSFSYPNGYSNCPNYGNSMTGRYQYQPYYVNQGTSGWPAIRPTAGPANPPPPYVDHQAAKKVKNDVNVHKDTLRLEVDERNPDHHLVSFVFDALYDGSITIFYFAKEVETCKFIPLFPEVEPVRIPFHKGAGQNFCQTSGTGIDLGFFALDDLSKPSEGEDVFPLIICAETYSRTPSADENLSESTPDVSPNMQITQAVLEKNGSGSFQVKVVRQILWIDGARYELRELYGIGSSTAADFNDSDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELIEIKINNSNQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0323 380 MobiDBLite consensus disorder prediction 28 50 - -
Sto3g0323 380 ProSiteProfiles Zinc finger RING-type profile. 325 364 IPR001841 -
Sto3g0323 380 PANTHER MAHOGUNIN 1 379 IPR045194 GO:0061630
Sto3g0323 380 MobiDBLite consensus disorder prediction 28 51 - -
Sto3g0323 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 374 IPR013083 -
Sto3g0323 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 379 - -
Sto3g0323 380 SUPERFAMILY RING/U-box 324 370 - -
Sto3g0323 380 SMART ring_2 325 363 IPR001841 -
Sto3g0323 380 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 324 364 IPR045195 -
Sto3g0323 380 Pfam Zinc finger, C3HC4 type (RING finger) 323 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0323 Sto-Chr3 2099511 2102771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0323 126 344 C3H Transcription Factor Family AT3G09770 47.768 2.79e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0323 - - jre:109005888 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0323 3 2099511 2102771 Sto3g0323 3 2099511 2102771 ECH