Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0298 atgaagaTTCAGCCAGCTCCAGCCAATCTATCAATACCGCAagGTTTTGCGTTTCCTTCCCTTATTTCTGCGCCAACAGGAATATGTTATAACTTCAAGGCTCCTTCTAGTTGTTTAGATCTTAATGGAGAACTTGAGAGAATGATTATAGAGGGAAACCCCGTGGGTACACTACTGGCAATGAATAATGCCAATGGAAACCAGGAAATGGAATTTGCCCATGAACCACACATAGGGTTAGAATTTGAAACGCCAGATGATGCTCTTCAGTTTTACACATTATATGCAAAGCGAACTGGTTTTAAAGTTCGGATTGGTCAGTTGTATCGATCAAGAACTGATGGCTCAGTTTCTTCTAGAAGATTTGTGTGCTCAAAGGAGGGATATCAGCTCAGTTCAAGATCAGGTTGTCCAGCATTTATACGGGTACAGAGACGCAATTCAGGGAAATGGGTTGTCGATCACTTCCTGAAGGGCCACAATCATGAACTTGAACCTGAAGGTGAGGGTGAAAGTTGCCCACCTAATTTGCAGCTCAAGGATCCTACAGCTATAAAGTCTGATACTGGTGTGTCCCGTAGGCAAAGGAAAAAAATGCTTGAAGAAGCTAAGGATGATCTCTCTTCTCCCTTTGGCTTAATTAACTTTAAGCGTCTGAGGAAAGGAGATGAAGGACAGTCCAGGATTGAACCATTTGTAGGTCAAGAATTCAATTCATCTAATGAAGCTTATCAATTTTATCATGCATATGCTGCATATGTGGGTTTCAGAATTCGTATTGGTCAACTGTTTCGTTCAAAGAATGATGGGTTAATCACGTCCCGACGTTTTGTGTGCTCAAAAGAGGGATTCCAGCACCCTTCAAGAGTTGGTTGTGGGGCTTACATGAGAATTAAGAGACAACCATCTGGAAAGTGGATAGTGGACCGTCTTCATAAAgatcataatcataattttgATCCTGAAAAAGAGGACAGCCAAAAAAGTCCACCTGCTTTAAATATTTTGACAGATGATGTTGACACTGGAGTGGTGAATGCTAACTCATTTAGGATAGATAACTACCCTGTTCCTAGAGGAGGTAGACAAAATCATATTAAAAGTGATTGGTATAGTGTGCTTTTAGAGTATTTTCAATCAAGACAAGCAGAAGATACAGGATTTTTTTATGCTGTGGAAGTTGATAATGGTAATTGCATGAGCATATTTTGGGCTGATGGCAGATCTAGATATTCATGCAGTCAATTTGGTGATGTCCTTGTTTTGGATACATCATATAGAAAAAGTGTCTATTTGGTGCCATTTGCTACTTTTGTTGGCATTAACCATCACAAGCAACCTGTGCTTCTCGGATGTGCTCTAATTGCTGATGAATCTGAGGAGTCTTTCACTTGGTTGTTTCAAACATGGATGAGGGCAACATCTGGCCGGCAGCCACTGTCAGTAATAGCTGATCAAGACATTACAATCCAGAAGGCAATAGCAAAGGTCTTTCCAGGAAGCCATCATCGCTTTTCATTGTGGCAAATTAAGGCAAAAGAACAAGAAAATATGGGTTTGTTGGGTAATAAATTTACATACGACTATGAAAGGTGTGTTTACCAAAGTCAGACAATTGAAGAATTTGACAGCACATGGAATGCTCTAATCAACAAATATGGATTGGTGGGCAATGCTTGGCTAAGGGAAATGTATGAGAAGCGCGCATCTTGGGTTCCATTATATTTGAAAGGCACATTTTTTGCAGGCATTCACATGAATGAAAGTGTTGATTCATTCTTTGGTACACTTTTAAATGGCCAAACACCACTCATGGAGTTCATTTCACGATATGAAAGAGGTCTTGAGCGACGCCgcgaggaagaaagaaaagaggacttTAATACTTCCAATTTTCAACCTTTTTTGCAAACTAAAGAACCAGCAGAAGAACAATGTAGAAGGCTTTATACTCTTGCCATATTCAAAATATTTCAGAAAGAGCTTCTACAATCCTACAGCTATcttgggtttaaaatttatgaagaaGGGGTTCTCAGCAGATATTTGGTGCGTAGGTGTGGGAATGATCCTGAGAAGCATGTAGTTACTTTTACTGCAGCCAATATCAATGTAAGCTGTAGCTGTCAGATGTTTGAATATGAAGGTATTCTTTGCAGACATGTTCTCAGGGTTTTCCAAATTTTGGAATTAAAAGAAGTTCCATGTCGCTACATCCTACACCGCTGGACGAGAAATGCCGAGAATGGTGTATTTCCTGACACAGAATCATGGAGTAGCCCTCAGGAACTAAGGAATTTGATGATGTGGAGTCTAAGAGAAACTGCGTGTAAATACATAGATGCTGGTGCATCATCTCTTGACAAGTACAAACTTGCCTATGAGATTTTGCAGGAGGGTGGAAGGAAGCTATGTTGGCATAGTTTTTTCACTATTGTGTTGGATATTGTGCTATGTGGATGGATGGAGCGAGTGAATGCAGTTCTttga 2490 0.3908 MKIQPAPANLSIPQGFAFPSLISAPTGICYNFKAPSSCLDLNGELERMIIEGNPVGTLLAMNNANGNQEMEFAHEPHIGLEFETPDDALQFYTLYAKRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGYQLSSRSGCPAFIRVQRRNSGKWVVDHFLKGHNHELEPEGEGESCPPNLQLKDPTAIKSDTGVSRRQRKKMLEEAKDDLSSPFGLINFKRLRKGDEGQSRIEPFVGQEFNSSNEAYQFYHAYAAYVGFRIRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCGAYMRIKRQPSGKWIVDRLHKDHNHNFDPEKEDSQKSPPALNILTDDVDTGVVNANSFRIDNYPVPRGGRQNHIKSDWYSVLLEYFQSRQAEDTGFFYAVEVDNGNCMSIFWADGRSRYSCSQFGDVLVLDTSYRKSVYLVPFATFVGINHHKQPVLLGCALIADESEESFTWLFQTWMRATSGRQPLSVIADQDITIQKAIAKVFPGSHHRFSLWQIKAKEQENMGLLGNKFTYDYERCVYQSQTIEEFDSTWNALINKYGLVGNAWLREMYEKRASWVPLYLKGTFFAGIHMNESVDSFFGTLLNGQTPLMEFISRYERGLERRREEERKEDFNTSNFQPFLQTKEPAEEQCRRLYTLAIFKIFQKELLQSYSYLGFKIYEEGVLSRYLVRRCGNDPEKHVVTFTAANINVSCSCQMFEYEGILCRHVLRVFQILELKEVPCRYILHRWTRNAENGVFPDTESWSSPQELRNLMMWSLRETACKYIDAGASSLDKYKLAYEILQEGGRKLCWHSFFTIVLDIVLCGWMERVNAVL 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0298 829 Pfam SWIM zinc finger 706 727 IPR007527 GO:0008270
Sto3g0298 829 ProSiteProfiles Zinc finger SWIM-type profile. 694 730 IPR007527 GO:0008270
Sto3g0298 829 Pfam MULE transposase domain 419 512 IPR018289 -
Sto3g0298 829 SMART 26again6 705 732 IPR006564 GO:0008270
Sto3g0298 829 MobiDBLite consensus disorder prediction 162 183 - -
Sto3g0298 829 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 195 805 - -
Sto3g0298 829 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 62 169 - -
Sto3g0298 829 Pfam FAR1 DNA-binding domain 245 320 IPR004330 -
Sto3g0298 829 Pfam FAR1 DNA-binding domain 90 165 IPR004330 -
Sto3g0298 829 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 195 805 IPR031052 GO:0006355
Sto3g0298 829 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 62 169 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0298 Sto-Chr3 1954080 1957194 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sto3g0298 MULE 1.4e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0298 - - gmx:100780519 1243.02