Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0269 ATGGCCACCACCGACAAAGCCATGGAAGACGATCGCCGATCCAAAGCTTCCTCATGTATTGAATTCTCCGACTTGGAAAAAGAGAACCCAAAAGAAACGAATCTTGCTACAGTGAGAAGCAGAAGAGCTCGGACTGGGTTTTCTGATTCTTTTTCAACCATTGAGTTTCAATCTTTATATATCAATGAGGAAGGCACACGGGAGAGGGAGTGCTCTACTAGTACAGGTACAGGTAGAGGTACAGGTACAGGCACAGGCGTTGCTGACGACTCCCCTAGAAGTTTAGCATCTGAAGCCCCTTCTTCCAATGCCAGCACTTCTGATTCAGAGTCTCAACCAGATCATGTAGGAAACAACGCCCAGTGGCGTGGTTTCCTTCATTTTATGAAAAAAGGATCCCCTATGCGTATTCCCAAACTCACCAGAAGAACAGTTAAAAGAATCAAGGAGGACCTCATCCCTACTATGAATACTCCAGCTCAACCGCCATCTCTTGATCCAGATTTGTACTGCTTTAAATCTTCATGGATAAATTACTCTCTTGCAGAAATTAAAGCTGCCACCAACAACTTCAGCCATGAGTGTTTGATTGGGGAGGGAGGTTATGCTGAGGTTTACAAAGGAACAATGAAGGATGGAAAAATTGTAGCAATCAAACGGCTGACAAGAGGAAACCAAGAAGAAATGActgctgatttcttgtctgAACTTGGTATTATAGTGCACGTTGACCATCCCAATATTGCCAGATTGATTGGTTATGGTGTAGAAGGGGGAATGTTTCTTGTTCTTCAGTTGTCTCCACATGGCAGCCTAGCATCCATACTTTATGGACCTCGAGAGAAACTTAGTTGGAGCATCAGATATAAGGTTGCTGTAGGGACTGCTGAGGGCCTTCATTATCTGCATGAGGGATGTCAAAGAAGGATCATTCACAGAGATATCAAGGCTGCTAATATTTTGCTCTCAGAAGATTTTGAACCTATGGTATCTGATTTTGGGCTTTCAAAGTGGTTACCTGACCAATGGACTCACCATACCGTTGACAAAATCGAAGGCACTTTCGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAGACAGATGTCTTTGCTTATGGAGTGCTATTATTGGAGCTCATTACCGGGCGACAAGCTTTGGACAGCTCTCAGAAAAGTTTGGTGATGTGGGCAAAACCTTTGCTATCTGTAGATAAAATCAAAGAGCTTGTTGATCCATGTCTGAGTGATGCTTATAATGAAGAACAGATGAAACTTTTAATCTTGACGGCTTCTATGTGTATAGATCAGTGTTCAGCTGAGCGACCACAAATGAGCGAGGCAAGagaagtatttttcttttcttcagatAGGCAACAATTCAAGTATGTATTAAAGACTCTAAAAGGTGATGAAGAGAGCTTGAAGCACATAACACAAAGGCAGAAGTCAAAACTTCGAAGGACGTACTCTGTGGAGCTGTTTGATGCAGAAGAGTACAATTCTACCAAGTATTTGAGTGATATGAATCGACAATTGGACTCTAATTCTTTTAAGGAAGAAACCGTTCAGAATCAGAACTAG 1596 0.4129 MATTDKAMEDDRRSKASSCIEFSDLEKENPKETNLATVRSRRARTGFSDSFSTIEFQSLYINEEGTRERECSTSTGTGRGTGTGTGVADDSPRSLASEAPSSNASTSDSESQPDHVGNNAQWRGFLHFMKKGSPMRIPKLTRRTVKRIKEDLIPTMNTPAQPPSLDPDLYCFKSSWINYSLAEIKAATNNFSHECLIGEGGYAEVYKGTMKDGKIVAIKRLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLASILYGPREKLSWSIRYKVAVGTAEGLHYLHEGCQRRIIHRDIKAANILLSEDFEPMVSDFGLSKWLPDQWTHHTVDKIEGTFGYLPPEFFMHGIVDEKTDVFAYGVLLLELITGRQALDSSQKSLVMWAKPLLSVDKIKELVDPCLSDAYNEEQMKLLILTASMCIDQCSAERPQMSEAREVFFFSSDRQQFKYVLKTLKGDEESLKHITQRQKSKLRRTYSVELFDAEEYNSTKYLSDMNRQLDSNSFKEETVQNQN 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0269 531 MobiDBLite consensus disorder prediction 1 47 - -
Sto3g0269 531 ProSiteProfiles Protein kinase domain profile. 191 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g0269 531 PANTHER OS08G0249100 PROTEIN 30 510 - -
Sto3g0269 531 SMART serkin_6 191 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g0269 531 MobiDBLite consensus disorder prediction 71 118 - -
Sto3g0269 531 Pfam Protein kinase domain 195 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto3g0269 531 MobiDBLite consensus disorder prediction 1 38 - -
Sto3g0269 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Sto3g0269 531 SUPERFAMILY Protein kinase-like (PK-like) 179 468 IPR011009 -
Sto3g0269 531 ProSitePatterns Protein kinases ATP-binding region signature. 197 219 IPR017441 GO:0005524
Sto3g0269 531 Gene3D Transferase(Phosphotransferase) domain 1 268 489 - -
Sto3g0269 531 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 30 510 - -
Sto3g0269 531 MobiDBLite consensus disorder prediction 64 118 - -
Sto3g0269 531 Gene3D Phosphorylase Kinase; domain 1 163 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0269 Sto-Chr3 1804770 1808259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0269 179 456 Receptor kinase-like Gene Family AT1G53420 41.958 8.34e-67 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Sto3g0269 Pkinase 2.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0269 - - lja:Lj6g3v1915960.1 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0269 3 1804770 1808259 Sto3g0269 3 1804770 1808259 ECH
Sto3g0269 3 1804770 1808259 Sto13g3923 13 40314187 40315826 ECH
Sto3g0269 3 1804770 1808259 Sto8g0555 8 3411465 3413201 ECH
Sto3g0269 3 1804770 1808259 Sto13g3566 13 38228984 38230497 ECH