Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0265 ATGGAAATCCAAGCTTCTTCTACTCCAATATTACCTGAACAACCTCGCtcatcgtcgtcgtcgtcgccaCCGCCGCCACCCTCGGCTCTTCCAGGTCATCGGTCAGGTGTTTCGGAGATGGACGTGCAACAGCGTTTGCCTGAAGATATTTCATCCGTTTGGGACCTGGATTGCCTTTTAGATTTCAGCTTGGACGATCAGTTAAATCTCGCCTTGGACGACTATCCCCCTAATTCGGAGGAGGTTTTTGAGCCGTTGGGGCTTCCTCCACAAGAGAATCCCAATTCCGACAAGGTCCGCAAGCGAGACCCTAGGTTGACTTGCTCCAATTTCATCGCGGGTCGGGTCCCGTGTGCATGCCCGGAGCTCGATGCGAAGCTTGAGGAAGAAGGTTTGCCTGGTAAGAAGCGGGCTCGGACCGTGCGGGCATCAGCCGGGATTGCACGCTGCCAGGTACCTGGGTGCGAGGCAGATATTAGCGAGCTCAAAGGATACCATCGGAGGCATAGGGTCTGTTTGCGTTGCGCAAATGCTAGCACAGTTATGCTTGATGGGGAGGCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCATATATTATCAGATTTTGATGAAGGTAAGCGAAGCTGTAGAAGAAAATTAGAGCGCCACAACCGAAGGCGTCGAAAGCCTACAGATTCTCGAGCTGCAGAGGATCAAGAAGTTCAACCTGTTACACAGACTGAGGAAGAAGCTGGAAAAGATAGTTCACATTTGAGTAGTGAGATTAACGAAATTGGAGCTGCACTGGATCATGAGGATCAACAAACTCCTGATACCCTAAATGTTAATTGTGATAGTCTTGTGTCATTTGCTGCTTGTGGTGAAGCACAACTAAATGGGGGAAAAGATAATTCTAATATTTCTAATTCACCATCATATTGTGACAACAAGAGTGCTTACTCATCTATGTGCCCAACAGGTCGGATATCTTTTAAGCTTTATGATTGGAATCCTGCTGAATTCCCTAGAAGGCTACGGCACCAAATATTCCAATGGCTGGCCAGTATGCCTGTTGAGCTAGAGGGTTATATCCGCCCTGGGTGTACAATCCTGACATTACTTGAAGACCCTCTTTATTATGTGCATGACCTTGTTGCTCCAGGAAAGATATTATCGGGAAGAGGCACCATACTTGTCCATCTGAATGACTCGATCTTTCATGTTATGAAAGATACAACTTCTGTGATGGAAGTCCAGATAAAGGTTCAGGCACCAAGGCTTCACTACGTTCATCCCATGTACTTTGAGGCTGGAAAACCTATGGAATTTTTTGCTTGTGGAAGTAACTTGCTGCAACCTAAGTTTCGGCTTCTAGTATCTTTTTCTGGAAAGTATTTGAAATATGATTATTGTGTTGCATCTCCTCATAACTGGACGGGAGATGGCATTTCTTGTGCTTTTGACAATCAACTATACAAGATATATGTCCCTTGTACAGAGCCAAATCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAGTCTGGTTTATCAAACTTCATCCCTGTACTCATTGGGGACAAGGAAATCTGCTCTGAAGTGGAGATATTACAGCAAAAACTAGATGTATCTCTTCTTTCTAAACAATCCCAGTCTGCATCTGGTAGTTCTATCTGCAGCTTCTGTGAAGCTTTTGCACTGAGACATCCAGCATATTCGGACTTACTGATGAGTGAGATTGACATGACATTACTACGAAAACACATGTATCAAGCTAGAGATTTCCTTTATCAGAAACATCAAAGTTGTGAAGATTCAGCAGCGCACTCTGTTTTTTCTGAAATGGAAGGACATAAAGTTGCTCAGAGCTACTATCAAGACAACACATCAATTGTTGCAATCAACAGTCAGGGTTGTGAGTCAAGAGAGAATGGTAAGAGGTTGGAAGTACTGAGAAATCCAGCTTGTAATGATAAAAGTGAAAGGATGCCTCTTTTGAAGAGGGAGATCATAATGAATGTGGAAGAGTTTCCGAGAAGACCTGGTTATCGGTATCTTGCCCGGGGTTTCTTGAGTTCACGACCTGCTATCCTTATGATTGCTTCAGTTGCAATTTGTGTTGGGGTTTGTGCAGTCCTCCTTCATCCTGGAAGGGTTGGTGAGTTTGCAGTATCCATTAGAAGGTGCTTGTTTAGCAATTCGTAG 2187 0.4408 MEIQASSTPILPEQPRSSSSSSPPPPPSALPGHRSGVSEMDVQQRLPEDISSVWDLDCLLDFSLDDQLNLALDDYPPNSEEVFEPLGLPPQENPNSDKVRKRDPRLTCSNFIAGRVPCACPELDAKLEEEGLPGKKRARTVRASAGIARCQVPGCEADISELKGYHRRHRVCLRCANASTVMLDGEAKRYCQQCGKFHILSDFDEGKRSCRRKLERHNRRRRKPTDSRAAEDQEVQPVTQTEEEAGKDSSHLSSEINEIGAALDHEDQQTPDTLNVNCDSLVSFAACGEAQLNGGKDNSNISNSPSYCDNKSAYSSMCPTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTLLEDPLYYVHDLVAPGKILSGRGTILVHLNDSIFHVMKDTTSVMEVQIKVQAPRLHYVHPMYFEAGKPMEFFACGSNLLQPKFRLLVSFSGKYLKYDYCVASPHNWTGDGISCAFDNQLYKIYVPCTEPNLFGPAFIEVENESGLSNFIPVLIGDKEICSEVEILQQKLDVSLLSKQSQSASGSSICSFCEAFALRHPAYSDLLMSEIDMTLLRKHMYQARDFLYQKHQSCEDSAAHSVFSEMEGHKVAQSYYQDNTSIVAINSQGCESRENGKRLEVLRNPACNDKSERMPLLKREIIMNVEEFPRRPGYRYLARGFLSSRPAILMIASVAICVGVCAVLLHPGRVGEFAVSIRRCLFSNS 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0265 728 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 49 571 - -
Sto3g0265 728 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 572 725 - -
Sto3g0265 728 SUPERFAMILY SBT domain 148 227 IPR036893 GO:0003677|GO:0005634
Sto3g0265 728 Pfam SBP domain 150 223 IPR004333 GO:0003677
Sto3g0265 728 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 49 571 IPR044817 GO:0003677
Sto3g0265 728 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 572 725 IPR044817 GO:0003677
Sto3g0265 728 MobiDBLite consensus disorder prediction 215 253 - -
Sto3g0265 728 Gene3D - 146 211 IPR036893 GO:0003677|GO:0005634
Sto3g0265 728 MobiDBLite consensus disorder prediction 1 42 - -
Sto3g0265 728 MobiDBLite consensus disorder prediction 81 102 - -
Sto3g0265 728 ProSiteProfiles Zinc finger SBP-type profile. 147 224 IPR004333 GO:0003677
Sto3g0265 728 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0265 Sto-Chr3 1773123 1778868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0265 573 721 SBP-box Gene Family AT5G18830 30.921 1.76e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto3g0265 SBP 1.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0265 - - gmx:100776034 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0265 3 1773123 1778868 Sto3g0265 3 1773123 1778868 ECH