Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0264 ATGGCGAGATACAGAAGCCGGAGCAGAAGCTACAGCCCTCGCAGGCGAAGCAGGACCCCACCACGTGGACGCAAGCGCTACGATGATGAACCTCGCGATCGCAGGTCTTACAGAGACCGCCGCTCTCCGGCACCTTCTGGCTTGCTTGTTCGTAATCTTCCCCTTGATGCTAGGCCAGAAGATCTTAGGGGCCCATTTGAGCGCTATGGTCCTGTGAAAGATGTTTATCTTCCTAAGAATTATTACACTGGtgaGCCCCGGGGCTTTGGATTTGTAAAATTTCGATATGCTGAAGATGCTGCTGAAGCAAAGCAACAACTTAATCATACTGTTATTGGTGGGCGTGAAATAAGAATTGTGTATGCTGAGGAAAATAGGAAAACTCCTCAAGAAATGCGTGTGAGTTCTCGCGTAAGTGGTCGATACGGAGGAAATGGTAGAAGGAGAACTCCCACAAGATCCCCAAGACGCCGATATCGTTctCACTCGCGGTCTCTATCACCAGTTAGAGATGACTCGAGGGATCACAGGGGCAAGGACGATGATTATTCTCCTGAGAGATCAAGATCTTATTCTAGGTCTCCTTCACCTCGTGGTGGGAAGGATTACAGGAGGTCCCCAAGTCCAAGGGAGAATGGTCGGAGTCCTGATGATCGGAGGGATCAAACACATAGCAGGTCGGAGAGTCCTCAAGGTAATGGTCGCAGTCCCTCAAGGTCTCGTTCGCGGTCATACAGGTAA 741 0.5007 MARYRSRSRSYSPRRRSRTPPRGRKRYDDEPRDRRSYRDRRSPAPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQQLNHTVIGGREIRIVYAEENRKTPQEMRVSSRVSGRYGGNGRRRTPTRSPRRRYRSHSRSLSPVRDDSRDHRGKDDDYSPERSRSYSRSPSPRGGKDYRRSPSPRENGRSPDDRRDQTHSRSESPQGNGRSPSRSRSRSYR 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0264 246 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 242 - -
Sto3g0264 246 SMART rrm2_1 47 120 IPR003954 GO:0003676
Sto3g0264 246 MobiDBLite consensus disorder prediction 164 188 - -
Sto3g0264 246 MobiDBLite consensus disorder prediction 227 246 - -
Sto3g0264 246 MobiDBLite consensus disorder prediction 198 226 - -
Sto3g0264 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 118 IPR000504 GO:0003723
Sto3g0264 246 SMART rrm1_1 47 120 IPR000504 GO:0003723
Sto3g0264 246 MobiDBLite consensus disorder prediction 1 21 - -
Sto3g0264 246 MobiDBLite consensus disorder prediction 1 53 - -
Sto3g0264 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Sto3g0264 246 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Sto3g0264 246 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 242 - -
Sto3g0264 246 MobiDBLite consensus disorder prediction 22 41 - -
Sto3g0264 246 MobiDBLite consensus disorder prediction 126 246 - -
Sto3g0264 246 Gene3D - 2 135 IPR012677 -
Sto3g0264 246 SUPERFAMILY RNA-binding domain, RBD 45 150 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0264 Sto-Chr3 1764346 1768070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0264 50 108 Eukaryotic Initiation Factors Gene Family AT3G11400 45.763 2.45e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0264 K12900 - gmx:100788749 283.878