Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0256 ATGCAAGCAGCTCAAGGTCAAGCAGCCACGGATGAAGCTCCTGATAATTCACAGAAGACTGATCCCCAGTTGAACAAAGAAATTTCAGATAATGGACCCAGTGGAAGGCGTCCAGATATATCACTTCAAATCCCACCTagacatttagggtttggaagtGCACGTACTGTAAGAGGTCTGGACCCTTCACAAAGTTTCAATAAAAGGATTCCATCACCAGGAGGCTTCTTGCGGGCTTTGAGCCTCAAAAGGAAAGGCAATACTGCAGATGCTGAAAGAAGCAGTCTTCTTAATTCAGATCCCAAAACAACTCCAGAAAGTCCTAATATGGCCAACTTTACATCTGCAATGTCATGGCAAAGATGTACTTCTCTTCCTGTTACACCTGCAACTAAAAATCTGTCCCCATCAGTTTCTACACCTGCTTCTGCAAGGACTTACAATGAGCAGCCAAAGCTACATAAAGAAGTTGTTCCTTCGAAGGTTTCAAGATCCCTCTCTGTACCTGGACGGAATATTGTTATTGTAAGATCTGTATCTTTTGCTGCCCGCAGTGAGCATGCACAACAAGATCAGGATGATGATCAAATAACTCCTGTGCAAGTAGAAGGTGATGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATTTGTTATGATATCTGTGATGAAAGGAACACCCTGAAATTGGAGTGCAGTTGTAAAGGTGACCTGAGACTGGTGCATGAAGAATGTGCAATTAAATGGTTTAGCACAAAGGGAAATAAGAAATGTGATGTTTGTGGCCAAGAGGTTCAGAATTTACCTGTAACTTTGCTTCGTTTGCCCAGCTCTGCCCAAAGGAGAGAGGCTCAGGGTCAGCAGAACTTGCGTTCAGAGACAATAAGTGCCTGGCAAGACTTCGTGGTGCTTGTCTTAATAAGCACGATATGCTATTTTTTCTTCCTTGAGCAGCTACTGCTCCCAGACATGAAGACTCAAGCAATCATTATAGCAGCACCATTTGCCTTTACCTTGGGTCTCTTGGCATCAATTTTTGCAGTCATCCTTGCAATAAAAGAGTATATATGGACATATGCTGCTCTCGAGTTTGCTCTTGTGGCTATAACTGTACACCTGTTCTATTCTATGGTGAGTAACAATTTAGGAAGTTCTCATAATCATATTCATATTCTAGTATTTATGGCACCTGAACCATATGCGACGATATACAAGAGTGAAATCAGGGAAAATAACTGA 1242 0.4155 MQAAQGQAATDEAPDNSQKTDPQLNKEISDNGPSGRRPDISLQIPPRHLGFGSARTVRGLDPSQSFNKRIPSPGGFLRALSLKRKGNTADAERSSLLNSDPKTTPESPNMANFTSAMSWQRCTSLPVTPATKNLSPSVSTPASARTYNEQPKLHKEVVPSKVSRSLSVPGRNIVIVRSVSFAARSEHAQQDQDDDQITPVQVEGDDEEIPEEEAVCRICYDICDERNTLKLECSCKGDLRLVHEECAIKWFSTKGNKKCDVCGQEVQNLPVTLLRLPSSAQRREAQGQQNLRSETISAWQDFVVLVLISTICYFFFLEQLLLPDMKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVAITVHLFYSMVSNNLGSSHNHIHILVFMAPEPYATIYKSEIRENN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0256 413 PANTHER OS02G0165000 PROTEIN 8 379 - -
Sto3g0256 413 MobiDBLite consensus disorder prediction 127 147 - -
Sto3g0256 413 MobiDBLite consensus disorder prediction 1 30 - -
Sto3g0256 413 MobiDBLite consensus disorder prediction 91 111 - -
Sto3g0256 413 MobiDBLite consensus disorder prediction 1 74 - -
Sto3g0256 413 SUPERFAMILY RING/U-box 212 266 - -
Sto3g0256 413 MobiDBLite consensus disorder prediction 127 153 - -
Sto3g0256 413 SMART ringv_2 215 263 IPR011016 GO:0008270
Sto3g0256 413 CDD RING_CH-C4HC3_MARCH 216 263 - -
Sto3g0256 413 Pfam RING-variant domain 216 262 IPR011016 GO:0008270
Sto3g0256 413 MobiDBLite consensus disorder prediction 87 111 - -
Sto3g0256 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 270 IPR013083 -
Sto3g0256 413 PANTHER ZINC FINGER PROTEIN 8 379 - -
Sto3g0256 413 ProSiteProfiles Zinc finger RING-CH-type profile. 208 269 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0256 Sto-Chr3 1736506 1740225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0256 209 321 C3H Transcription Factor Family AT5G05830 34.646 2.19e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0256 - - gmx:100527094 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0256 3 1736506 1740225 Sto3g0256 3 1736506 1740225 ECH