Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0254 ATGTATGATGGTGATGAAAACAAGCGACTGGATGCACTGCGATTAGCTGTTGAGTTGGGAGCTGATTACGTTGATGTTGAAGTTAAGGTTCCAGTAATTGGAATTGCTATGGGTGAGAGGGGTGTGATGTCACGCATACTCTGTGGAAAATTCGGAGGATATATGACTTATGGTAGGCTAGAGTGTGGACTAGTTTCATCTCCCGGTGAACCCACAATTAAGGATCTGCTACATGTATACAATTTCAGAGAAATAGGTGCCGATACCAAAATATTTGGGGTTATTGGAAACCCCATCGCCCACAGCAAATCCCCCTTTTTGTACAATCAATCCTTTCAATCCGTTGGTTTCGATGCTGTTTATCTACATTTTCTCGTTGATCATCTTCCCAGCTTTCTACGAACTTACTCATCCACCGATTTTGCGGGATTCAGTGTGGGCATTCCTCACAAGGAGACTGCACTTAAGTGCTGTGATGAGGTCAATCCAGTAGCAAAGTCCATAGGAGCTGTGAATTGCATTATAAGGAGATCAGAGGATGGGAAGTTGAGTGGATACAATACTGATTATTTTGGTGCTATTTCTGCTATTGAGGATGCTCTACGAgGTAAGGTAAAGGATAGTAGTATGTGGTCACCATTAACTGGTAGGCTGTTTGTTGTGATTGGAGCTGGTGGTGCTGGGAAGGCACTTGCTTATGGTGCTAAGCAGAAAGGAGCAAGGGTTGTCATTGCCAACCGCACCTATGATCGTGCGAGAGAACTTGCCAACACAATTGGAGGAGATGCTTTAGCCCTTTCTGATTTAAATAATTATCACCCAGAGGATGCCATGATCCTAGCAAACGCAACATCAATTGGAATGCAACCAAAAGTTGACGAAACGCCTATTTCTAagcATGCTTTGAAGTTTTACTCGCTGGTTTTTGATGCGGTGTACACCCCAAAAATGACTAGACTGTTGAAGGAGGCAGAAGAGTCAGGAGCTACCATTGTAACAGGAATGGAAATGTTAATAGGGCAGGCCTATGAACAGTATGAGAGCACCAAAGGAGCTTTTCAGAAAAATTATGACAAATTACTAATGAGAATTGAGATAATTAAATTGGGCCGGGCTGAGGCGGGCGGGCCGGCCGCGAGGCCCATTGGCGCCCATTACTTCCAACCGGAAATTACCCTTGCTTCATCCTTGAGCCCGTATGGTATTTCTGAAATAAGTCAAACTGCATTGCTCTTCCGCTTCCGGCACCCTTCCCGTTCATTCAGCCCGCGGCTCCGTCTCTCTCTCcacctcttcttctctctcaagTCTGAGTGTTCCACAGGTCCAGTTTTGATGGACTGCAACAGAGAAGAGGCCTTAAGGGCCAAGGTCATTGCTGAAAAGAAGATGGAAAGCAAAGATTTCACAGGGGCTCGTAAAATTGCTCTTAAAGCTCAGCAACTTTATCCTGATCTGGAAAACATAGCTCAAATGCTTATTGTATGTGAGGTGCATTGCTCTGCTGAGCAGAAATTGTTTGGTAATGAGATGGACTGGTACGGAATTCTTAAAGTTGAGCAGACAGCTGATGAGGCAACAATAAAGAAGCAATACAGAAAGTTTGCTCTCCAACTTCATCCTGACAAGAACAAGTTTGCTGGTGCAGAAGCTGCTTTTAAGTTAATTGGGGAAGCTCAGGGAGTGCTTTTGGACAAAAATAAACGGGCTATGCTTGACATGAGGTGCAGGTTTCCTGTGAACAGAACTGCAAGGTCATATCATCCGGCACAGAAGGTTCATACAAATTCTAATCCTGGCTTCCAAAACAATGTCAAGGCCAACTTTTCAAACTTGAATcctcagcagcagcagcagcctCCGAGACAGCAAACTCAGCAGGGGCCAAATGGCAGCCGCCCTACATTTTGGACTGCCTGCCCATTTTGTTCTAGTAGATATGAGTTTTACCGAGATGCTATAAATAAATCCTTCCGCTGTCCAACTTGTGGTAAGATTTTTATTGCATCTGATGTGCTTATGCAAGGTAAATCACCAGCAGCTAATTCAGGTCAGAAAGCATTTTGCCAACAGAAATATGATTTAAATCAAGGTGCTTCCAAGGTGGATATTGGATCTCAAGACAGCAGTGATTCTGAAGAAGAAATGGGTGTTGACAAGGATGGTATTCCTGATGGACTAAACCATCCAAATTACAGTGAAGAGCCTCCACGAAGATCTATGCGACAAAAGCAACAAGTAATTTACAAGGAGAATgtgagtgatgatgatgatgacaattTAAACCCTTCAACCAGGGCCAAGGGAAGTGATTCATCACTTGATGCTGGAGAAGATTATGGGGAGACAGCTAAAATGAATAATCAGAATggttataaaaatgatgatacTGTGGACATGAGGGGAAAAGAAGCAGCAAGATGCTCTAAAGGGACAGAAGATTCAGCCTCCAAAGAAACAGAGGATCCGACTTTTTTTAACTATCCTGATGCTGAGTTTAGTGACTTTGTGAGTGATAAGAATGGAGAGTATTTTGAAAGTGGGCAGATTTGGGCTATTTATGACACGGTTGATGGCATGCCGAGATTCTATGCTCTAATAAGAAAAGTTATCTCTCCTGGGTTCCGGTTGCGGATAACATGGTTTGAAGCAGAGCCAGATGATAAGGATGAAATGTGCTGGGTAGAAAAGACTTTGCCAGTTGCTTGTGGGAAGTATAGGTTTGGTCATACTGAAGTTACTGAAGACCGTCTCATGTTCTCTCATCTGATTTTGTGTAAAAAGATTGGCCGCagtaattttaatgtttatccTAGAAAGGGGGAAACTTGGGCTCTGTATAAAAATTGGGATATCAAATGGTACATCAACGTGGAGTCTCATCAGAAGTATGAATATGAGTTTGTTGAAATTTTGTCAGACTATGTTGAGGGTAAGGGTGTATCTGTTGCGTACTTGGATAAGCTGAAAGGTTTTGTTAGTCTTTTCTCTCGAACTATGAAAGGTGTGGAATGTTTTCAAATTCCATCGGTGGAGTTATATAGATTCTCTCACAGGGTTCCTTCTCATAAAATGACTGGTCAGGAAAGAGAAGGTGTTCCTGAAGGATCTTTTGAGCTTGATCCTGCAGCTTTGCCTATGTCCTTACTAGCTGGCTGTTCCTGA 3165 0.4161 MYDGDENKRLDALRLAVELGADYVDVEVKVPVIGIAMGERGVMSRILCGKFGGYMTYGRLECGLVSSPGEPTIKDLLHVYNFREIGADTKIFGVIGNPIAHSKSPFLYNQSFQSVGFDAVYLHFLVDHLPSFLRTYSSTDFAGFSVGIPHKETALKCCDEVNPVAKSIGAVNCIIRRSEDGKLSGYNTDYFGAISAIEDALRGKVKDSSMWSPLTGRLFVVIGAGGAGKALAYGAKQKGARVVIANRTYDRARELANTIGGDALALSDLNNYHPEDAMILANATSIGMQPKVDETPISKHALKFYSLVFDAVYTPKMTRLLKEAEESGATIVTGMEMLIGQAYEQYESTKGAFQKNYDKLLMRIEIIKLGRAEAGGPAARPIGAHYFQPEITLASSLSPYGISEISQTALLFRFRHPSRSFSPRLRLSLHLFFSLKSECSTGPVLMDCNREEALRAKVIAEKKMESKDFTGARKIALKAQQLYPDLENIAQMLIVCEVHCSAEQKLFGNEMDWYGILKVEQTADEATIKKQYRKFALQLHPDKNKFAGAEAAFKLIGEAQGVLLDKNKRAMLDMRCRFPVNRTARSYHPAQKVHTNSNPGFQNNVKANFSNLNPQQQQQPPRQQTQQGPNGSRPTFWTACPFCSSRYEFYRDAINKSFRCPTCGKIFIASDVLMQGKSPAANSGQKAFCQQKYDLNQGASKVDIGSQDSSDSEEEMGVDKDGIPDGLNHPNYSEEPPRRSMRQKQQVIYKENVSDDDDDNLNPSTRAKGSDSSLDAGEDYGETAKMNNQNGYKNDDTVDMRGKEAARCSKGTEDSASKETEDPTFFNYPDAEFSDFVSDKNGEYFESGQIWAIYDTVDGMPRFYALIRKVISPGFRLRITWFEAEPDDKDEMCWVEKTLPVACGKYRFGHTEVTEDRLMFSHLILCKKIGRSNFNVYPRKGETWALYKNWDIKWYINVESHQKYEYEFVEILSDYVEGKGVSVAYLDKLKGFVSLFSRTMKGVECFQIPSVELYRFSHRVPSHKMTGQEREGVPEGSFELDPAALPMSLLAGCS 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0254 1054 CDD NAD_bind_Shikimate_DH 236 347 - -
Sto3g0254 1054 PRINTS DnaJ domain signature 514 532 IPR001623 -
Sto3g0254 1054 PRINTS DnaJ domain signature 532 547 IPR001623 -
Sto3g0254 1054 PRINTS DnaJ domain signature 548 568 IPR001623 -
Sto3g0254 1054 MobiDBLite consensus disorder prediction 796 820 - -
Sto3g0254 1054 MobiDBLite consensus disorder prediction 587 632 - -
Sto3g0254 1054 Pfam Domain of unknown function (DUF3444) 825 1029 IPR024593 -
Sto3g0254 1054 PANTHER - 446 708 - -
Sto3g0254 1054 PANTHER - 710 1049 - -
Sto3g0254 1054 Gene3D DnaJ domain 509 628 IPR036869 -
Sto3g0254 1054 CDD DnaJ 512 565 IPR001623 -
Sto3g0254 1054 Gene3D Aldolase class I 28 88 IPR013785 -
Sto3g0254 1054 Hamap Shikimate dehydrogenase (NADP(+)) [aroE]. 89 368 IPR022893 GO:0004764
Sto3g0254 1054 ProSiteProfiles dnaJ domain profile. 512 576 IPR001623 -
Sto3g0254 1054 SMART dnaj_3 511 568 IPR001623 -
Sto3g0254 1054 SUPERFAMILY Aldolase 2 82 - -
Sto3g0254 1054 Gene3D Leucine Dehydrogenase, chain A, domain 1 89 186 - -
Sto3g0254 1054 MobiDBLite consensus disorder prediction 700 824 - -
Sto3g0254 1054 Pfam DnaJ domain 512 573 IPR001623 -
Sto3g0254 1054 Pfam Type I 3-dehydroquinase 29 80 IPR001381 GO:0003855
Sto3g0254 1054 Pfam Shikimate dehydrogenase substrate binding domain 94 174 IPR013708 GO:0004764
Sto3g0254 1054 MobiDBLite consensus disorder prediction 735 764 - -
Sto3g0254 1054 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 446 708 - -
Sto3g0254 1054 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 710 1049 - -
Sto3g0254 1054 TIGRFAM aroE: shikimate dehydrogenase 90 360 IPR011342 GO:0004764|GO:0019632|GO:0050661
Sto3g0254 1054 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 81 188 IPR046346 -
Sto3g0254 1054 Gene3D - 187 356 - -
Sto3g0254 1054 Pfam Shikimate / quinate 5-dehydrogenase 215 279 IPR006151 -
Sto3g0254 1054 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 190 350 IPR036291 -
Sto3g0254 1054 SUPERFAMILY Chaperone J-domain 508 579 IPR036869 -
Sto3g0254 1054 MobiDBLite consensus disorder prediction 588 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0254 Sto-Chr3 1712162 1728045 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0254 449 672 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.188 1.85e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0254 - K13832 gmx:100779228 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0254 3 1712162 1728045 Sto3g0254 3 1712162 1728045 ECH