Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0239 ATGGACGTGTACTCTGAGCATGAGCATGAGATGATGGGAGAAGCTTCTGGAGAGAACAGTAATAGCATTAGCAAGGGAATGGTGGATTACATGCTCCACAATCCTCAACCTCAAGAAGATGAAGGCTGTGGGTTTTACGCCACCACTAGTAATTGCACCTCTTTTGACAAACTTAGTTTTGCAGATGTCATGCAGTTAGCAGATTTGGGCCCAAAATTAGGGTTCATGaatcctcatcatcatcatcaaaccaagaataataataataatatgattaaCAACCAAGACGACGAAGCAGCAGCAGCAGAAGCAGGAATGGACCCCGTTTTCTTCCTCAAATTCCCCGTCTTAAACGACAATAAGTCGTTGGGGGATCATAATCTGATGCTCACGGGAGATAATAATCATGATgtagagagagaggaggctTCTCATAAATCTGATATCAAGCTTGGAGAAGAAGATATGGTAGTTATGGACATCATGAATAAGGACGatgacaacaacaacaacaatactACTAATAACAAGAGCAGCAAGAGAAAAAGGAGCAGAAGCATCAAGACAAGCGAGGAAGTGGAGAGTCAGCGTATGACTCACATCGCCGTGGAGAGGAATCGCCGCAAGCAAATGAACGAGCATCTTCGAGTTTTGCGATCTCTCATGCCCGGATCTTACGTTCAAAGGGTACGAGGAGCAATAGAGTTTGTGAGGGAGTTGGAGCAGTTGCTACAATGCTTGGAGTCACAGAAGAGGAGGAGGCTAGTTGGAGTGGGTGgagattcttcttcttcttcttcatgtcTAGTTGGaatgcagcagcagcagcaggcTCCGATGTTTATGGCATTAGGAGGAAATATGAATAATATTGATGAAGAGGAAATGATTCATAATATTGatcagaataataataataataataaggtgaTGGAATTTGATGCAACATGTGGTGGGCTGAGGGAAGAGACGGCAGAGAATAAGTCGTGTTTGGCTGACGTGGAAGTGAAGGTATTGGGATTCGATGCCATGATAAAGATACTCTCAAGAAGAAGGCCCGGACAGTTGATTAAGACTATTGCTGCACTTGAAGATCTGCACCTCCTCATACTCCACACCAACATCACCACTATTGAGCACACTGTTCTTTATTCCTTCAATGTCAAGGTCGCAACCGATTCCAGGTTCACCGCTCAAGACATAGCCACTTCTGTCCAACacattttcagttttattcaCGACAACACTGcaatctaa 1257 0.3819 MDVYSEHEHEMMGEASGENSNSISKGMVDYMLHNPQPQEDEGCGFYATTSNCTSFDKLSFADVMQLADLGPKLGFMNPHHHHQTKNNNNNMINNQDDEAAAAEAGMDPVFFLKFPVLNDNKSLGDHNLMLTGDNNHDVEREEASHKSDIKLGEEDMVVMDIMNKDDDNNNNNTTNNKSSKRKRSRSIKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRVRGAIEFVRELEQLLQCLESQKRRRLVGVGGDSSSSSSCLVGMQQQQQAPMFMALGGNMNNIDEEEMIHNIDQNNNNNNKVMEFDATCGGLREETAENKSCLADVEVKVLGFDAMIKILSRRRPGQLIKTIAALEDLHLLILHTNITTIEHTVLYSFNVKVATDSRFTAQDIATSVQHIFSFIHDNTAI 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0239 418 SMART finulus 201 246 IPR011598 GO:0046983
Sto3g0239 418 MobiDBLite consensus disorder prediction 1 20 - -
Sto3g0239 418 PANTHER TRANSCRIPTION FACTOR FAMA 14 417 IPR044283 GO:0003700|GO:0010052
Sto3g0239 418 Gene3D - 186 256 IPR036638 GO:0046983
Sto3g0239 418 MobiDBLite consensus disorder prediction 162 198 - -
Sto3g0239 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 255 IPR036638 GO:0046983
Sto3g0239 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 247 IPR011598 GO:0046983
Sto3g0239 418 Pfam Helix-loop-helix DNA-binding domain 196 223 IPR011598 GO:0046983
Sto3g0239 418 PANTHER TRANSCRIPTION FACTOR FAMA 14 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0239 Sto-Chr3 1632285 1633735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0239 11 416 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 50.572 2.73e-124 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto3g0239 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0239 - - pvy:116125979 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0239 3 1632285 1633735 Sto3g0239 3 1632285 1633735 ECH