Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0214 ATGAATGGAAGTAGTAGTAATAACAATATGCAAAAATTCAAAGGCGTGGTGCCTCAACAAAATGGTCATTGGGGTGCACAAATATACGCAAACCACCAAAGAATATGGCTTGGAACCTTCAAGTCCGAAAGAGAAGCAGCCATGGCGTATGACAGTGCGACCATCAAGCTTCGGAGCGGCGAGAGCCACCGGAACTTCCCGTGGAACGATCAGACGGTTCAAGAGCCTCATTTCCAGAGCCATTACACCACGGAAGCCATCCTAAGCATGATCAGAGATGGCACCTATCCTTCCAAGTTTGCTTCTTTCCTCATAAGCacacaaacccaaaccctaaccctaaccctaaccctaaataaTGAAGATCATCATCAAGAAGCAGGAATTACAAGGATGcaaaataacaataacaataatggGGATGAGGAAAAATTCTCATGCACCCTTCTCTTCCAAAAGGAACTTACACCAAGTGACGTAGGGAAGCTCAATAGGCTTGTCATCCCTAAAAAACATGCAAGCAGGTATTTTCCATACGTTTCCGGTAGCGCCGAAGAAGGCGGCGATATCGATGATCACAATAACTATATTAGcactgaaaataataataataatagtgacACTGAGCTTGTGTTTTATGACAAGCTAATGAGGTCATGGAAGTTTAGGTATTGCTATTGGAGAAGCAGCCAGAGCTTTGTGTTCACAAGGGGATGGAATAGATCATCATCAAGTGTTTTCCTTGATTGA 750 0.3907 MNGSSSNNNMQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEREAAMAYDSATIKLRSGESHRNFPWNDQTVQEPHFQSHYTTEAILSMIRDGTYPSKFASFLISTQTQTLTLTLTLNNEDHHQEAGITRMQNNNNNNGDEEKFSCTLLFQKELTPSDVGKLNRLVIPKKHASRYFPYVSGSAEEGGDIDDHNNYISTENNNNNSDTELVFYDKLMRSWKFRYCYWRSSQSFVFTRGWNRSSSSVFLD 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0214 249 Pfam B3 DNA binding domain 151 241 IPR003340 GO:0003677
Sto3g0214 249 CDD B3_DNA 150 239 IPR003340 GO:0003677
Sto3g0214 249 SMART rav1_2 12 73 IPR001471 GO:0003700|GO:0006355
Sto3g0214 249 SUPERFAMILY DNA-binding pseudobarrel domain 148 241 IPR015300 -
Sto3g0214 249 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 6 241 IPR044800 GO:0003700
Sto3g0214 249 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 6 241 - -
Sto3g0214 249 Gene3D AP2/ERF domain 11 68 IPR036955 GO:0003700|GO:0006355
Sto3g0214 249 SUPERFAMILY DNA-binding domain 12 69 IPR016177 GO:0003677
Sto3g0214 249 ProSiteProfiles AP2/ERF domain profile. 12 67 IPR001471 GO:0003700|GO:0006355
Sto3g0214 249 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Sto3g0214 249 Gene3D - 138 245 IPR015300 -
Sto3g0214 249 SMART B3_2 151 246 IPR003340 GO:0003677
Sto3g0214 249 Pfam AP2 domain 12 58 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0214 Sto-Chr3 1433952 1434793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0214 8 240 RAV Transcription Factor Family AT1G51120 58.824 4.15e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Sto3g0214 B3 1.8e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0214 K09287 - qsu:111998385 309.686