Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0200 ATGGATGACAAATTTCCCAAGATGGAAATCTTGATGCAGAAGGCAATGGGATCAAAGATTTTGGAGGATTCAATTCCATCATCAATAGCAGCATCATCGTCATCTGAAAATTTTCTTTCGATTTTGGATTCCAATTTGATCCCTgatcaacacaaaagtcaattCATTTCTGAATTCAATCCCATTCCCATCTCACCAACCAAACAAAGCTTCATTCCTCTAAATCTATTGGAAACCTTTCCAGAATTACCCACACCACATGTATCTGATGAcccagcttcttcttcttcttctagattcccatatttgactttgtttttGCAGGAACCCTCCAAGTTATTCTCATCATCCTCAACTTCAGACTGTTCTTCATTTCCAGTGTCCCACCATCCAATTCATCAGAACCAAGCAGGAGGTAGGGATACACTCAAAATGAAACAGAATTGTAGAAACTTGCGATCCAAGTCATTCAATGACTATTGCTTGAGCAGCACCAAGAGTGAGACTATGAAGTATGGTGGAAGAGGGAAGCTTTTCAAGGGAGTGAGGCAGAGACACTGGGGAAAATGGGTGGCAGAGATCAGATTACCAAGGAATAGGACTAGGGTTTGGCTCGGGACATTCGACACGGCCGAGGATGCTGCCATTGCTTACGACACAGCAGCATACATACTACGTGGAGAATATGCTCAATTGAACTTTCCAGAGCTAAAGCATCATATCAAGGCCAACTCTTTGAATGGAACTACTGCTGCTCTTCTGGAGGCAAAGCTTCAAGCAATATCTTCACAAACCATACCAGAGtcattgatgatgaagaagaagaagaagatgaacaagTCAAGTGAGAATGGGAAAGTGAATACAATTGAGTTAGAGAAGGAGGTTGATGATACAATTGAGAGGAGCAAAAGTAATGATGATCATGAGCAGATAATATCAGATGTGGAAGGTATTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACATCATTTGGGATTCCCTTTTAGTCTCTGATTAA 1023 0.3754 MDDKFPKMEILMQKAMGSKILEDSIPSSIAASSSSENFLSILDSNLIPDQHKSQFISEFNPIPISPTKQSFIPLNLLETFPELPTPHVSDDPASSSSSRFPYLTLFLQEPSKLFSSSSTSDCSSFPVSHHPIHQNQAGGRDTLKMKQNCRNLRSKSFNDYCLSSTKSETMKYGGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPELKHHIKANSLNGTTAALLEAKLQAISSQTIPESLMMKKKKKMNKSSENGKVNTIELEKEVDDTIERSKSNDDHEQIISDVEGIQLSRMPSLDMDIIWDSLLVSD 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0200 340 CDD AP2 177 237 IPR001471 GO:0003700|GO:0006355
Sto3g0200 340 ProSiteProfiles AP2/ERF domain profile. 178 235 IPR001471 GO:0003700|GO:0006355
Sto3g0200 340 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 20 340 - -
Sto3g0200 340 Gene3D AP2/ERF domain 178 236 IPR036955 GO:0003700|GO:0006355
Sto3g0200 340 Pfam AP2 domain 179 227 IPR001471 GO:0003700|GO:0006355
Sto3g0200 340 SMART rav1_2 178 241 IPR001471 GO:0003700|GO:0006355
Sto3g0200 340 PRINTS Ethylene responsive element binding protein signature 179 190 IPR001471 GO:0003700|GO:0006355
Sto3g0200 340 PRINTS Ethylene responsive element binding protein signature 201 217 IPR001471 GO:0003700|GO:0006355
Sto3g0200 340 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 20 340 - -
Sto3g0200 340 SUPERFAMILY DNA-binding domain 178 235 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0200 Sto-Chr3 1287953 1288975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0200 1 336 AP2-EREBP Transcription Factor Family AT4G13620 40.884 4.39e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto3g0200 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0200 - - gmx:100820013 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0200 3 1287953 1288975 Sto3g0200 3 1287953 1288975 ECH