Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0198 ATGGCATCAACATCTGGTGCCGGCAAGACTCCATTCCCTGTGCAAGAGGCAGTTTCCAACTATCATCCCTATCCTGCACCTCTTGCAAAATATCAGGACGTTGTAGCTGATCCCAGGCTCTTTATGCATACCTTGGAGAAGCTTCACACTTCTATGGGTACCAAGTTCATGATCCCCATTATTGGGGGAAGAGAACTAGATTTGCATCGGCTTTTTGTGGAAATTATTAGAGAGAGAAGATGGAAAGAAGTAACTGCAGTGTTCAATTTTCCATCTACAGCTACGAATGCTTCTTTTGTGTTGCGGAAGTACTATTCTTTATTGATTTACCACTATGAAcagatatattattttaatgcaCAGGGATGGACGCGACCAAATGATGTTTTGCAGAGTCAATCGGCAATACCAGTTCCTGCTCAACAAATGCAGTTTTCGCATCCTCCAGCTAATGCTGCTGAATTTTCCGAagCAATGCCAGCTTCTTCTGCAGGACCTCCAGTGATTGGGGTAATCGATGGAAAATTCGAGAGTGGGTATCTTGTTACTGTCACAATAGGTTCAGAGAAACTTCGAGGTGTACTATATCAGGCTCCACGAAACCCTATACTTCCAGCGTCACAGCAGCATAATAGTGTTTCAGTCAATCACAATAATACCTCACCAGCTTCGTTGGGTGGTCATCGTCGCCGGCGCAAGAAATCTGAGATAAAAAGGAGAGATCCTGCTCATCCAAAGCCCAACCGAAGTGGGTACAATTTCTTCTTTGCAGAGCAGCATGCAAGACTGAAACCACTTCACCATGGGAAGGACCGAGAAATCAGTCGGATGATTGGGGAACTCTGGAACAAATTAAAAGAGCCAGAGAAAGCAGTTTATCAAGAGAAGGCTGTTAAGGATAAAGAGAGGTACAGAGCAGAAATGGAGGATTATAGGGAGAAGATAAAGACTGGTCAGCTTATAAGTGATGTGCCACCGCAACATCGACTTCCGGGTACCGATATGATGGATGTGGACTTAAAAGTGGATGAAACCGAGGGAGGAGAGTCTCCTCAAACACCAGATGAGAGCAGTTCTGGGGAAAGTTACTATGAAGATGAAAAAGGTACAGAACATAACTTTGACATGGATGCATCAACTGGAATAATTGGAGTGGGTGCTGAATCAAGCTTTCTGGGTTTAGAGAAGTCATCAAAGGAGGGGGAAACTGAGTTTCAGAAGAAAGAAGGGGATGATGATGGAGGACATCAACAAGCTCAGCACATGGATGAGAGCAAAGGTATGATGGCTATGTAG 1296 0.4375 MASTSGAGKTPFPVQEAVSNYHPYPAPLAKYQDVVADPRLFMHTLEKLHTSMGTKFMIPIIGGRELDLHRLFVEIIRERRWKEVTAVFNFPSTATNASFVLRKYYSLLIYHYEQIYYFNAQGWTRPNDVLQSQSAIPVPAQQMQFSHPPANAAEFSEAMPASSAGPPVIGVIDGKFESGYLVTVTIGSEKLRGVLYQAPRNPILPASQQHNSVSVNHNNTSPASLGGHRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHHGKDREISRMIGELWNKLKEPEKAVYQEKAVKDKERYRAEMEDYREKIKTGQLISDVPPQHRLPGTDMMDVDLKVDETEGGESPQTPDESSSGESYYEDEKGTEHNFDMDASTGIIGVGAESSFLGLEKSSKEGETEFQKKEGDDDGGHQQAQHMDESKGMMAM 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0198 431 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 245 312 IPR009071 -
Sto3g0198 431 Gene3D High mobility group box domain 229 323 IPR036910 -
Sto3g0198 431 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 380 - -
Sto3g0198 431 SMART hmgende2 244 313 IPR009071 -
Sto3g0198 431 SUPERFAMILY HMG-box 233 317 IPR036910 -
Sto3g0198 431 SMART ARID_2 32 113 - -
Sto3g0198 431 CDD ARID_HMGB9-like 37 113 IPR045303 GO:0003677
Sto3g0198 431 Pfam HMG (high mobility group) box 245 312 IPR009071 -
Sto3g0198 431 Coils Coil 294 314 - -
Sto3g0198 431 MobiDBLite consensus disorder prediction 205 225 - -
Sto3g0198 431 SUPERFAMILY ARID-like 33 123 IPR036431 GO:0003677
Sto3g0198 431 SMART bright_3 36 118 IPR001606 GO:0003677
Sto3g0198 431 MobiDBLite consensus disorder prediction 205 252 - -
Sto3g0198 431 MobiDBLite consensus disorder prediction 394 431 - -
Sto3g0198 431 Pfam ARID/BRIGHT DNA binding domain 40 113 IPR001606 GO:0003677
Sto3g0198 431 ProSiteProfiles ARID domain profile. 35 117 IPR001606 GO:0003677
Sto3g0198 431 MobiDBLite consensus disorder prediction 395 420 - -
Sto3g0198 431 CDD HMGB-UBF_HMG-box 245 309 - -
Sto3g0198 431 MobiDBLite consensus disorder prediction 344 377 - -
Sto3g0198 431 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 4 380 - -
Sto3g0198 431 Gene3D - 28 127 IPR036431 GO:0003677
Sto3g0198 431 PRINTS High mobility group (HMG1/HMG2) protein signature 277 296 - -
Sto3g0198 431 PRINTS High mobility group (HMG1/HMG2) protein signature 296 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0198 Sto-Chr3 1277613 1280825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0198 1 342 ARID Transcription Factor Family AT1G04880 58.981 1.69e-122 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sto3g0198 ARID 3.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0198 - - gmx:100783284 529.635