Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0181 ATGtacccttcttcctcttcctcctcctcccaaAAATCCATATCCCACAGCGGCTTAACCCGCTACGGTTCCGCCCCCGGCTCCCTCTTAACCAACGCCGTCGATGCCGTCATCTCTGGATCCGACCGTGAATTCCCCCCCGCCGCCCCATCACGCCCTCCTGTTCCCTCTCATTTCTTCTCCGGCGATTCCTCCGACTCCACCTGCAAAGTCAACTCCTCCGATCCCAAAGACCACCACACTAGACCTGCCTTGCAGAGATCCTATGGACTTCATGAACCATCCCTCGCCTTTGGCGGctcctcttcttcttcggcTTCCGCTTTGCTCCGTCAGAGAAGCTCCCCAGCTGGCTTCCTCAGCCATCTCACTAATGCTACTCAACCTGAAAATGCAGGCTTCTCAATTTCAAGGGGCACCGGAAGCTACAACTCACAAGGTGTTTCTAATAGTGGCCATGGAGTATCAAGGTTGAAATCTCAATTGAGCTTCACGGGGCAAGAATCTCTTTCTCAGATATCAGAGGTGAGCGAAAATGTTGTTGATGGCATCAGTTCTGACAATGGTCATCATAGAACTACACATTCTTTTGCTACAACCAGCTTCGGAATGGACACCTGGGATAATTCAAACTCCATTGTGTTTTCTGCTCCGCCAAGTAAACGTGCTAAGAATATTGATGGAGACATTCTAAACTGTCTTAATGCCTTGGAAACTCAGTTTAGTCTGCCACAAACAACTCTGGAAATGGCGACAGTGGAGAAGCTACTGCATATTCCTGAAGATTCTGTTCCATGTAAAATTCGTGCTAAGCGAGGCTGTGCTACTCATCCAAGAAGCATTGCAGAACGGGAGAGAAGAACTAGAATAAGTGGGAAACTGAAGAAATTACAGGAGCTAGTGCCTAATATGGACAAGCAAACAAGCTATGCAGACATGCTGGATTTGGCTGTTCAACATATCAAAGGCCTACAAACTCAAGTTCAGAACTGGAGAATTGCACCTGTGGATGTAAACAAGGCTCGTAGAACAGCGTGCATAAAGTTCAAGGATTCTGACGGCCAAGAATCAACTGATTTTGTACCTTCAAATTTAATAATGCAGTTGTAG 1110 0.4514 MYPSSSSSSSQKSISHSGLTRYGSAPGSLLTNAVDAVISGSDREFPPAAPSRPPVPSHFFSGDSSDSTCKVNSSDPKDHHTRPALQRSYGLHEPSLAFGGSSSSSASALLRQRSSPAGFLSHLTNATQPENAGFSISRGTGSYNSQGVSNSGHGVSRLKSQLSFTGQESLSQISEVSENVVDGISSDNGHHRTTHSFATTSFGMDTWDNSNSIVFSAPPSKRAKNIDGDILNCLNALETQFSLPQTTLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQTQVQNWRIAPVDVNKARRTACIKFKDSDGQESTDFVPSNLIMQL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0181 369 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 18 330 - -
Sto3g0181 369 PANTHER TRANSCRIPTION FACTOR BHLH129 18 330 - -
Sto3g0181 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 332 IPR036638 GO:0046983
Sto3g0181 369 Pfam Helix-loop-helix DNA-binding domain 279 325 IPR011598 GO:0046983
Sto3g0181 369 MobiDBLite consensus disorder prediction 41 82 - -
Sto3g0181 369 MobiDBLite consensus disorder prediction 1 27 - -
Sto3g0181 369 CDD bHLH_AtbHLH_like 279 329 IPR045239 -
Sto3g0181 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 274 324 IPR011598 GO:0046983
Sto3g0181 369 SMART finulus 280 330 IPR011598 GO:0046983
Sto3g0181 369 Gene3D - 271 333 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0181 Sto-Chr3 1138269 1142893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0181 18 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 50.289 2.09e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto3g0181 HLH 5.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0181 - - mnt:21404569 441.039