Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0176 ATGGCGTTCCTTCCTCAACCCCAAGAAGCCGAAGAAGACACAACCGTCGACGTCCACACCACCCGAGGTACTCCCATTCGGTATCTGCCTCTCGATCATCTTTATTCTAATACATCCCCTTGCCGTGTCAGCCCCAGTGGCTCTGCTAACGTCATGTCGAAGAAGGTCAAGGCCCGGAAACTTAATCCTACCAACTTCGAGGTCGATCCTGATCAGAAGAACTCACTTTCTAAGCCCCCTCTTGTTCATGTCTACTCTCGCCGCAATAAGCGGCCCCGGCATTCCTCGGAGAGCTCGTCGTTTAATGATTCTTTAGTCGGTCGTGGTGGACCCACCTCAAATAATTGTGAAATTGGTGATTCTGGGGAGCACAAGGAAAACGCCAATTCTGAAGTTGGAacgttgaagaagaagaaaaaagttgGGAACACTGAATTGGTGAATTTGGGGGTGGATTTGAGCGCATTAGGCAGTCTTGACGGACCTCGGTTGAGGGATTGCCGTGTTCACAGTATTACTGCTATTAGTAATTCTGGCACTAGTATGAAGAGAAAGCGTGCCTCTTCAGACGATTCTCCGAAGCTATTGCCTGCATCCCACAGTGTAAAGAGATGGGTCAGGTTGACTTTTGATAATTCTGATCCTGAGACATTGGTTGGACTACGATGCAAGGTTTATTGGCCGATGGATTTAAAATGGTACATTGGTAGTGTCATAGGTTATGATTCAGAAACTAAGATACATCAAGTGAAGTATGAAGATGGCGACGAGGAGAATTTAATACTTTCAAGTGAGAAAATAAGATTCCATGTTTCGCGCGGGGAATTGAAGCAATTAAACTTAAGTAGTTGTGACATTTCTGATTATGATGCTGAAGAGTTGCTTGCCTTGGCTGCAAGTTTGGATAACTGTCAAGAGTTTGAGCCAGGGGAAGTCGTATGGGCCAAGCTAACAGGTCATGCTATGTGGCCAGCTCTTGTGATGGATGAATCACTTGCTGGCAACTGTAAGGGTTTAAAATTGTTTTCAGGAGGAAGATCAATCCCTGTGCAATTTTTTGGAACCCATGACTTTGCAAGTGTTAGACTGCAGCAGGTGAAATCATTTCTCACTGGACTTCTTAATCATCTACACTTGAAATGCAAGAAACCTTGTTTTTTCGAAGGACTAGAAGAGGCTAAAATgTATTTAAGCAAACAGAAGCTTCCGTATGAGATGCTTCGATCCCAGAGAAGATGTAGGACTGATGACTTTAAAAATGCACATGGAGAGGAGGAAGGAGGTACAGATTCAGGTGAAGATGGCTTAGATGACAGATGGACTCTGACAGCATTGGAAAACATTGAAACTTCTCCTTATGTAGTAGGagatttgaaaattataagCCTTGGAAGAATTGTTCAAGATTCTGCAAATTTCCAAGATGGAACTGCAATCTGGCCAGAAGGTTACATGGCAGTGAGGAAGTTTACTTCAATTACTGACCCAAAAGTTTGTGCCTCATATAAGATGGAGGTGTTGAGAGATCCAGAGTCAAAGGTTCAACCGCTATTTAGGGTGACATTGGACAGTGGAGAGCAGTTCAACGGTCCTACAGCGTCTGCTTGCTGGAATAAAATATACAAAAGGAtaaagaaaatggaaaaggGTGTTTCTGAAGTTTCTGTTGTAGATGGTGGGCTTGAAAGGGACTACAAATCTGGGTCTGATATGTTTGGTTTCTCCAATCCTAAAGTGGTTAAACTTATACAGGGATTATCTAAATACAGTGTCTCTCCCAAAGACTTGATGCCCAATTTAGGCTCTGGAAGTTATAGTGACATGCCTGTTGGTTATAGGCAGGTTCATATTGATTGGTTTGACCTCGATAAGTGCAATGTGTGTCACATGGATGAGGAATACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGTTATGGAGAACTTGAACCTTCTAATGGAGTGCTATGGTTGTGCAACTTGTGTCGTTCAGGCACTCCCTCTCCCCCACCTTGCTGCTTATGTCCACTCATAGGAGGTGCAATGAAGCCTACAACAGATGGGCGATGGGCTCATTTGGCATGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGGATGGAGCCTATTGATGGGATAAGTAGAATCAATAAGGACCGCTGGAAGTTGTTATGCAGCATCTGTGGTGTACCTTATGGTGCCTGCATTCAGTGTTCAAACAATTCTTGTCGAGTAGCATATCATCCACTTTGTGCACGTGCTGCTGGTCTATGTGTTGAGCTTGAGAATGAGGACAGGCTCTATCTACTTTCTGTTGACGATGATGAAGATCAGTGCATTCGCTTACTCTCTTTCTGCAAGAAACATAGGCATCCATCAAATGACCATTCGGTTGCTGATGAACGCATTGGACGAGTTACCAGTCAATGTTCAGACTATAAACCACCAACCAATCCTTCTGGTTGTGCTCGCACTGAGCCATACAATAACTTTGGCAGGAGAGGGCGAAAAGAACCTGAAGCACTTGCAGCTGCATCCTTGAAACGATTATTTGTAGAGAACCAACCTCACTTAGTTGGTGGATATTGCCAGCATGGACTGTCAAATGATGCAGAGCAATCTGGAAGAGGAGTTTGCTCTAAATTCTTTTGTAGCCAGTATAGGTTGAAAACCTCTATCGTTGATGCTTCAGATGGCATACTTTCTATTGCTGAGAAATACAAGTACATGAGGAGAACCTTTCGGAAACGACTATCATATGggAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGCGGGGACATGGTGATTGAATACACTGGTGAACTGGTTAGACCTTCCATAGCTGACCGCAGAGAGAACTTAATATATAATTCGATGGTGGGTGCTGGAACATACATGTTTCGGATTGATGAGCAACGAGTCATTGATGCTACCAGATATGGAAGCATTGCTCATTTAATTAATCATTCTTGTGCACCAAATTGCTATTCAAGAGTTATCAGTGTTAATGGAGATGAGCATATAATAATATTTGCAAAGAGGGACATTAAACAGTGGGAAGAGCTCACATATGATTATAGGTTTTTTTCAAGTGATGAACGGCTAGCTTGTTATTGTGGCTTCCCAAGATGCCGAGGTGTGGTAAATGATACCGAGGCAGAAGAGCGAGCTGCAAAACTATATGTACCTCGAAGTGAATTGATAGACTGGAGGGGAGAATGA 3276 0.4261 MAFLPQPQEAEEDTTVDVHTTRGTPIRYLPLDHLYSNTSPCRVSPSGSANVMSKKVKARKLNPTNFEVDPDQKNSLSKPPLVHVYSRRNKRPRHSSESSSFNDSLVGRGGPTSNNCEIGDSGEHKENANSEVGTLKKKKKVGNTELVNLGVDLSALGSLDGPRLRDCRVHSITAISNSGTSMKRKRASSDDSPKLLPASHSVKRWVRLTFDNSDPETLVGLRCKVYWPMDLKWYIGSVIGYDSETKIHQVKYEDGDEENLILSSEKIRFHVSRGELKQLNLSSCDISDYDAEELLALAASLDNCQEFEPGEVVWAKLTGHAMWPALVMDESLAGNCKGLKLFSGGRSIPVQFFGTHDFASVRLQQVKSFLTGLLNHLHLKCKKPCFFEGLEEAKMYLSKQKLPYEMLRSQRRCRTDDFKNAHGEEEGGTDSGEDGLDDRWTLTALENIETSPYVVGDLKIISLGRIVQDSANFQDGTAIWPEGYMAVRKFTSITDPKVCASYKMEVLRDPESKVQPLFRVTLDSGEQFNGPTASACWNKIYKRIKKMEKGVSEVSVVDGGLERDYKSGSDMFGFSNPKVVKLIQGLSKYSVSPKDLMPNLGSGSYSDMPVGYRQVHIDWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPSNGVLWLCNLCRSGTPSPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGISRINKDRWKLLCSICGVPYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRHPSNDHSVADERIGRVTSQCSDYKPPTNPSGCARTEPYNNFGRRGRKEPEALAAASLKRLFVENQPHLVGGYCQHGLSNDAEQSGRGVCSKFFCSQYRLKTSIVDASDGILSIAEKYKYMRRTFRKRLSYGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRRENLIYNSMVGAGTYMFRIDEQRVIDATRYGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSSDERLACYCGFPRCRGVVNDTEAEERAAKLYVPRSELIDWRGE 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0176 1091 Gene3D - 298 407 - -
Sto3g0176 1091 CDD TUDOR 220 268 IPR002999 -
Sto3g0176 1091 MobiDBLite consensus disorder prediction 98 118 - -
Sto3g0176 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 672 803 IPR013083 -
Sto3g0176 1091 Pfam PHD-finger 637 671 - -
Sto3g0176 1091 ProSiteProfiles SET domain profile. 927 1045 IPR001214 GO:0005515
Sto3g0176 1091 Pfam PHD-zinc-finger like domain 679 800 - -
Sto3g0176 1091 Pfam F/Y rich C-terminus 515 588 IPR003889 GO:0005634
Sto3g0176 1091 Pfam SET domain 938 1044 IPR001214 GO:0005515
Sto3g0176 1091 PANTHER PHD FINGER PROTEINS 9 1088 - -
Sto3g0176 1091 ProSiteProfiles Extended PHD (ePHD) domain profile. 677 801 IPR034732 -
Sto3g0176 1091 SMART PHD_3 735 801 IPR001965 -
Sto3g0176 1091 SMART PHD_3 624 671 IPR001965 -
Sto3g0176 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 616 671 IPR013083 -
Sto3g0176 1091 MobiDBLite consensus disorder prediction 1 21 - -
Sto3g0176 1091 Pfam F/Y-rich N-terminus 456 506 IPR003888 GO:0005634
Sto3g0176 1091 CDD ePHD_ATX1_2_like 686 800 IPR041956 -
Sto3g0176 1091 ProSiteProfiles FYR domain FYRN motif profile. 450 509 IPR003888 GO:0005634
Sto3g0176 1091 SUPERFAMILY FYVE/PHD zinc finger 615 688 IPR011011 -
Sto3g0176 1091 SMART TUDOR_7 215 273 IPR002999 -
Sto3g0176 1091 MobiDBLite consensus disorder prediction 62 136 - -
Sto3g0176 1091 SMART fyrn_3 465 509 IPR003888 GO:0005634
Sto3g0176 1091 Gene3D SET domain 816 1080 IPR046341 -
Sto3g0176 1091 ProSiteProfiles Post-SET domain profile. 1051 1067 IPR003616 -
Sto3g0176 1091 SUPERFAMILY SET domain 918 1067 IPR046341 -
Sto3g0176 1091 MobiDBLite consensus disorder prediction 825 845 - -
Sto3g0176 1091 ProSitePatterns Zinc finger PHD-type signature. 625 670 IPR019786 -
Sto3g0176 1091 SMART set_7 927 1051 IPR001214 GO:0005515
Sto3g0176 1091 ProSiteProfiles PWWP domain profile. 309 372 IPR000313 -
Sto3g0176 1091 SUPERFAMILY Tudor/PWWP/MBT 303 405 - -
Sto3g0176 1091 SMART fyrc_3 517 595 IPR003889 GO:0005634
Sto3g0176 1091 SMART PWWP_4 307 371 IPR000313 -
Sto3g0176 1091 CDD PHD_ATX1_2_like 624 670 IPR042010 -
Sto3g0176 1091 Pfam PWWP domain 310 397 IPR000313 -
Sto3g0176 1091 ProSiteProfiles FYR domain FYRC motif profile. 513 599 IPR003889 GO:0005634
Sto3g0176 1091 Gene3D - 214 270 - -
Sto3g0176 1091 Gene3D - 451 591 - -
Sto3g0176 1091 ProSiteProfiles Zinc finger PHD-type profile. 622 673 IPR019787 -
Sto3g0176 1091 MobiDBLite consensus disorder prediction 119 136 - -
Sto3g0176 1091 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 9 1088 - -
Sto3g0176 1091 CDD SET_SETD1-like 915 1063 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0176 Sto-Chr3 1104444 1113806 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0176 625 771 C2H2 Transcription Factor Family AT3G14740 39.735 3.82e-26 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto3g0176 zf-HC5HC2H_2 1.6e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0176 - - gmx:100808923 1620.52