Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0152 ATGGTTACAATCCTCAAATTTCGTAGCATCTTCTTTGCAGTACGAGCCACAAATCCACCAACATTAAGCCCATGTACTGCATTGAGATATTGCCATTTTGAGTCTGAATGGGATGGCAATGCTTTGGAAAAAAACTCGAAATCCTCACAAACCAGGTTGCGAAGCAGCGTTGGAATTTTTTGGGATTTAGACAATAAACCACCCAAATCATTGCCACCTTATGAAGCTGCCAATAAGCTGAAAGCAGCTGCATCTCACTTTGGTGTTGTTAGGCATATGGTGGCTTATGCGAATCGGCACACTTTTAGCCATGTCCCACAAGATGTCCGGGAGCAGAGAAAAGAAAGGAGGTTGTTGAATCAATTAGAGAACAAAGGTGTGATCAAGCCAGATGAACCTTATCTTTGTCGGGTTTGTGgtagaaaattttatacaaatgagaaacttgttaatcattttaagCAAATTCATGAGCGTGAGCACATGAAAAGATTGAACCAGATAGAATCAGCAAAGGGGAGCAGGAGGGTGAAGTTGGTTGCTAAGTATTCGATGAAAATGCAGAAATATAAGAATGCTGTGAGGGGCGTCTTAACTCCCAAAGTGGGGTATGGTTTGGCAGATGAGCTAAAACGtgcagggttttgggttaggacTGTGCTGGATAAGCCACAAGCTGCAGATCTTGCATTGAATGGTCACATGGTGGATATGATGGATAAAAGGCAGGTTGAGTGTGTGGTTCTTGTGTCAGATGATTCAGATTTTGCAAATGTACTAAAGGAGGCAAAGTTACGATGTCTTAAGACAGTTGTTGTTGGGGATACCAATGATGGGGCCTTGAAGAGGACTGCCGATGCTGCCTTTTCTTGGGAGGAAATTCTGATGGGGAAGGCAAAGAAGGAGGCTGTATCAGTTGTGGAGAAGTGGAAGGATcgtaatattttaaatagattagagTGGACATACAAACCAGAGGTTGAGAAAAAGAAATTCACAactgaggaggaggaggaggaggaggatagTGAATACATGTTTGATGAAGTTGATGGTGTTGGTGCGGGTGCCTACAAAAATAAGGGAGGCTCAAATACTTGGTGGGAATTAGACACCGATGATCATGACTTCATAAACCAACAGTCAGGAAAATGA 1155 0.3879 MVTILKFRSIFFAVRATNPPTLSPCTALRYCHFESEWDGNALEKNSKSSQTRLRSSVGIFWDLDNKPPKSLPPYEAANKLKAAASHFGVVRHMVAYANRHTFSHVPQDVREQRKERRLLNQLENKGVIKPDEPYLCRVCGRKFYTNEKLVNHFKQIHEREHMKRLNQIESAKGSRRVKLVAKYSMKMQKYKNAVRGVLTPKVGYGLADELKRAGFWVRTVLDKPQAADLALNGHMVDMMDKRQVECVVLVSDDSDFANVLKEAKLRCLKTVVVGDTNDGALKRTADAAFSWEEILMGKAKKEAVSVVEKWKDRNILNRLEWTYKPEVEKKKFTTEEEEEEEDSEYMFDEVDGVGAGAYKNKGGSNTWWELDTDDHDFINQQSGK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0152 384 SUPERFAMILY beta-beta-alpha zinc fingers 130 160 IPR036236 -
Sto3g0152 384 ProSitePatterns Zinc finger C2H2 type domain signature. 136 157 IPR013087 -
Sto3g0152 384 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 29 376 - -
Sto3g0152 384 Gene3D - 47 296 - -
Sto3g0152 384 PANTHER - 29 376 - -
Sto3g0152 384 CDD PIN_LabA-like 144 275 - -
Sto3g0152 384 Pfam NYN domain 207 287 IPR021139 GO:0004540
Sto3g0152 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 162 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0152 39 374 C2H2 Transcription Factor Family AT4G12240 61.652 7.90e-150 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto3g0152 NYN 1.2e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0152 - - lang:109328008 512.686