Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0148 ATGGGATTCCTCTGGCCGACAATTAGGATGCCAGAATTTACAAGCATCAAGTTCCTCACAGGCTTGCTTCTACACCAAATAAAATCCATTATGATGATAGCACTTCATCATCTGGGTCCATCACCATCACAACAAGCTCCTCCTCTTGCTTCTGACACTTCCACTTCAACAAACAGCCGCCATGTCCTAATATTGGATGGTCTATCACCAACTCTAGTCCCTCTTCATGTTGTAATTTCACTCATCAAACAGAGGCTTCCCATTATAGAGTACAACAAGTTCTTGGAGAGGTCAATGGGTGATGATGAAGGATTAGATAAAGaacacaaagaagaagaagaagaagaagaagaagaagaagaacaagtggTATGTGCTGTGTGCTTAGACATGATTGAAGGTAGGCACAAGATCAGAGAGATTTCTAATTGCTGTCACATATTTCACAGAGAGTGTTTGGATAGATGGCTGGAGGAGAATCAGATCACTTGCCCTTTGTGCAGAACCATGCTATTTCCAGCTAATAAGGGAGCAGGACAAACCTTTATTCATTACTATCACTGA 564 0.3848 MGFLWPTIRMPEFTSIKFLTGLLLHQIKSIMMIALHHLGPSPSQQAPPLASDTSTSTNSRHVLILDGLSPTLVPLHVVISLIKQRLPIIEYNKFLERSMGDDEGLDKEHKEEEEEEEEEEEQVVCAVCLDMIEGRHKIREISNCCHIFHRECLDRWLEENQITCPLCRTMLFPANKGAGQTFIHYYH 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0148 187 SUPERFAMILY RING/U-box 114 174 - -
Sto3g0148 187 Coils Coil 102 122 - -
Sto3g0148 187 PANTHER RING ZINC FINGER PROTEIN-RELATED 118 176 - -
Sto3g0148 187 PANTHER RING ZINC FINGER PROTEIN-RELATED 6 102 - -
Sto3g0148 187 ProSiteProfiles Zinc finger RING-type profile. 125 168 IPR001841 -
Sto3g0148 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 173 IPR013083 -
Sto3g0148 187 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 6 102 - -
Sto3g0148 187 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 118 176 - -
Sto3g0148 187 SMART ring_2 125 167 IPR001841 -
Sto3g0148 187 Pfam Ring finger domain 125 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0148 Sto-Chr3 922780 923343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0148 121 173 C3H Transcription Factor Family AT1G63840 57.407 5.32e-15 67.4