Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0126 ATGGACTCAGCCCCAACTTcttccgccgccgccgccgccggtgCCGGAGGCCCTGCTCCTTTTCTTATCAAGACCTATGACATGATTGATGATTCTTCCACCGATGATATTGTGTCATGGAGCTCCACCAACAACAGCTTCGTCGTCTGGAACCCTCCCGAGTTTGctcgtcttcttcttcctacCTATTTCAAGCATAACAACTTCTCCAGTTTCATCCGCCAGCTCAATACCTATGGATTTCACAAAATACATCCTGAGCGATGGGAGTTTgctaatgatgattttgtgaaagaTCAAAAGCATCTTCTCAAGAATATTCATCGCAGGAAACCTATCCACAGTCACAGCCATCCTCCAGAACGGGCAGCATTAGAGGAAGAAATGGAGAAACTTTCACGAGAGAAAGCTTCTTTTGAATCCAATATTTTCAGATTTAAACAACAATGCTCAGCTGCAAAGCTTCAACTGGATGATGTATTACAGCGATTAGATGGTATGGAGAAGAGGCAGAAGAACTTGCTGAACTTCTTTGAAAAGGCTCTCCAGAGTCCCACTTTTGTTGAACAGCTTTCACATAAATTTGAGTGCATGGATTTATCTGCATATAATAAGAAAAGACGATTGCCTCAGGTTGATCACTTGCAGCCAGTTGCTGAAAGTAGCTTTGTGGAAAATCATAGCAATTTTAGACCAGAATTTGGACATGTCTTCCACCAAGATTTCTCGAACAAACTCCGATTGGAGTTATCACCAGCTGTCTCAGATATGAATTTGGTATCACGTAGCACACAGAGTTCAAATGAAGATGGGGAAAATCCACAGAAGAAGCTGTCCGAAGGAACACCAAAAGGAGTGCAGACAAGAACGGCTCTAGCATTTGCACCTGAAACGGTAGAGCTTGCAGATACTGGAGCATCTTTTACTTTCAAAATGGATTCATGTCTATCACAAAGAGCCACAACTGCTGAGTCCACAAAACTGAACTCTTTGCAGCTAAGTAATGAAGAAGGCGATAGTCACATATCCTGCCATCTAAATTTAACTCTGGCATCTTCTCCTTTGCAAGTCAACAGAAATACATACTCAGCTAGATCACCCCAAATAGACTGTCAGGAAATTGGCAAACTGGCGGAATCAAAATTTCACGACAATGATAAGGATTCTAGTGGTGGAGTTCCTTCAAACAGAAATGCAGGTACCGAGGCCACCAATTTAGCTTCCTCACAATCACAGGAGACTCCCAGTAACAGCCAAGTGCCCCCTGCTGCTCCAGCTAGAGTAAACGATATGTTTTGGGAACAGTTCCTAACTGAAAGACCAGGCTGTTCAGACAATGAAGAAGCAATATCCAACTACAGAGCAAATCCATATGACGAGCAAGACGAAGGCCGGTCTATACATGGAATCTCTAGGAATGTTAAGAATATGGACCATCTCACACTTTGA 1449 0.4086 MDSAPTSSAAAAAGAGGPAPFLIKTYDMIDDSSTDDIVSWSSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFHKIHPERWEFANDDFVKDQKHLLKNIHRRKPIHSHSHPPERAALEEEMEKLSREKASFESNIFRFKQQCSAAKLQLDDVLQRLDGMEKRQKNLLNFFEKALQSPTFVEQLSHKFECMDLSAYNKKRRLPQVDHLQPVAESSFVENHSNFRPEFGHVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGENPQKKLSEGTPKGVQTRTALAFAPETVELADTGASFTFKMDSCLSQRATTAESTKLNSLQLSNEEGDSHISCHLNLTLASSPLQVNRNTYSARSPQIDCQEIGKLAESKFHDNDKDSSGGVPSNRNAGTEATNLASSQSQETPSNSQVPPAAPARVNDMFWEQFLTERPGCSDNEEAISNYRANPYDEQDEGRSIHGISRNVKNMDHLTL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0126 482 Gene3D - 16 111 IPR036388 -
Sto3g0126 482 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Sto3g0126 482 MobiDBLite consensus disorder prediction 391 423 - -
Sto3g0126 482 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 478 IPR027725 -
Sto3g0126 482 MobiDBLite consensus disorder prediction 381 424 - -
Sto3g0126 482 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 14 478 - -
Sto3g0126 482 MobiDBLite consensus disorder prediction 458 482 - -
Sto3g0126 482 MobiDBLite consensus disorder prediction 260 287 - -
Sto3g0126 482 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto3g0126 482 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto3g0126 482 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto3g0126 482 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto3g0126 482 Coils Coil 122 170 - -
Sto3g0126 482 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto3g0126 482 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0126 Sto-Chr3 772187 775591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0126 21 482 HSF AT4G13980 55.368 4.83e-171 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto3g0126 HSF_DNA-bind 1.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0126 K09419 - gmx:100816484 771.926