Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0113 ATGCGGGTCTTTGCATTGTTAGTTTCTGTTTCTAACTGGTTTATAGGAAGTTCCTTTTTTAAGCGTTGTTATATCAGAATGGCATTCTGCAATAAACTCGGGAATTTATTAAGGCAGAGTGCCGCTCAGAACAGACAAGTCCCAGTTTCATCAATGCTGAATTATGTCCGCTGCATGTCATCCTCTAAGCTTTTCATTGGAGGCCTTTCTTATGGAGTCGATGACCAGTCTCTGAGGGATGCATTTGCCAGCTTTGGAGATGTGGTTGAGGCAAGGGTTATCACCGATAGAGACACTGGAAGGTCAAGGGGCTTCGGTTTTGTCAACTTCACCAGTGATGAGTCAGCATCTTCAGCAATGTCTGCAATGGATGGGCAGGAGCTAAATGGGCGAAACATTAGAGTGAGCTATGCAAATGATAGACCTTCTGGACCTCGATCATATGGCGGTGGTGGCGGCTATGGCGGTGGTGGCAGCTATGGCGGTGGCAGAGGCGGTGGATATGGAAGAGATGGAGGTTTTGACAGCGGATCCTTTTAA 540 0.4704 MRVFALLVSVSNWFIGSSFFKRCYIRMAFCNKLGNLLRQSAAQNRQVPVSSMLNYVRCMSSSKLFIGGLSYGVDDQSLRDAFASFGDVVEARVITDRDTGRSRGFGFVNFTSDESASSAMSAMDGQELNGRNIRVSYANDRPSGPRSYGGGGGYGGGGSYGGGRGGGYGRDGGFDSGSF 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0113 179 MobiDBLite consensus disorder prediction 136 179 - -
Sto3g0113 179 Gene3D - 38 175 IPR012677 -
Sto3g0113 179 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 27 177 - -
Sto3g0113 179 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 27 177 - -
Sto3g0113 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 134 IPR000504 GO:0003723
Sto3g0113 179 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Sto3g0113 179 SMART rrm1_1 63 136 IPR000504 GO:0003723
Sto3g0113 179 SUPERFAMILY RNA-binding domain, RBD 47 172 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0113 Sto-Chr3 698361 699860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0113 61 150 Eukaryotic Initiation Factors Gene Family AT4G34110 41.111 1.12e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0113 - - gmx:100527220 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0113 3 698361 699860 Sto3g0113 3 698361 699860 ECH