Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0084 ATGGCCGGCGTATCTCTTCAGTGCGGAGACTGTGGGGCGCTATTGAAGTCCGTTGAAGAAGCCCAGGAGCACGCTGAGCTCACCTCCCACTCCAACTTCTCCGAATCCACTGAAGCTGTTCTCAACCTTGTTTGCACTACTTGTGGCAAGCCATGCCGATCAAAAACTGAAAGCGATTTACATACAAAAAGAACTGGGCACAGTGAATTTGTTGATAAGACATCTGAGGCAACGAAACCAATAAGTTTGGAGGTTCCAAAGGTGGATGCTACGTCAGATGAGGCTGTCAATGCAACTACTGACCAGCCTGGAGaaaatatagAAATGGTTGTTCCGGAGGTTGACAAAAATCTGCTTGAGGAGCTTCAATCAATGGGCTTTCCAACTGAACGCGCAACACGTGCACTTCATTATTCTGGTAATACTAGCCTTGAGGCTGCCGTGAATTGGATAGTAGAGCATGAGAATGACCCTGACATTGATCAAATGCCCTtgGTACCAGCCAACACCAAAGTTGAGGCTCCTAAACCTTCTCTTACACCAGAGCAACTGAAGGCTAAACAACAAGAACTAAGGGAGAGGGCtcgcaagaagaaagaagaggaggagaaaagaatggaaagggaaagagaaaagGAGAGAATTCGTGTGGGCAAGGAATTACTGGAAGCAAAGAGGATTGAAGAGGAGAATGAGAGAAAACGGTTGTTGGCACTGCGGAAAgcagagaaagaggaagagaaaaggGCTAGAGAGAAAATCAGGCAGAAATTGGAAGAAGACAAGGCTGAAAGAAGGAGAAGACTCGGATTGCCTCCAGAAGAACCATCAGCTTCCAAACCTTCAACTGTTGTGGAGGAGAAAAAGAGCACATTGCCAGTTCGGCCTGCCACAAAATCTGAGCAAATGAGAGAGTGCTTGCGCTCTCTCAAGCAGAACCACAAGGACGATGATGCCAGAGTAAAGAGAGCATTTCAAACTCTTCTGACTTATGTAGGGAATGTCGTAAAAAATCCCGACGaggaaaaatttagaaaaataagACTCAGTAACCAAACTTTTCAGGAGAGAGTTGGTGCCTTGAAAGGAGGAATTGATTTCCTGGAAATTTGTGGATTTGAGAAAATGGAAGGTGGAGAGTTCTTGTTTTTGGCTAGGGACAAGGTTGACAAGGCAATCCTGAATTCTGCTGGTTCTGAACTGGACTCTGCCATCAAAAATCCCTTTTTTGGGGTTCTTTAG 1242 0.4219 MAGVSLQCGDCGALLKSVEEAQEHAELTSHSNFSESTEAVLNLVCTTCGKPCRSKTESDLHTKRTGHSEFVDKTSEATKPISLEVPKVDATSDEAVNATTDQPGENIEMVVPEVDKNLLEELQSMGFPTERATRALHYSGNTSLEAAVNWIVEHENDPDIDQMPLVPANTKVEAPKPSLTPEQLKAKQQELRERARKKKEEEEKRMEREREKERIRVGKELLEAKRIEEENERKRLLALRKAEKEEEKRAREKIRQKLEEDKAERRRRLGLPPEEPSASKPSTVVEEKKSTLPVRPATKSEQMRECLRSLKQNHKDDDARVKRAFQTLLTYVGNVVKNPDEEKFRKIRLSNQTFQERVGALKGGIDFLEICGFEKMEGGEFLFLARDKVDKAILNSAGSELDSAIKNPFFGVL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0084 413 Gene3D - 305 402 - -
Sto3g0084 413 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Sto3g0084 413 CDD UBA_PUB_plant 113 161 - -
Sto3g0084 413 Gene3D - 115 161 - -
Sto3g0084 413 PANTHER F13M7.16 PROTEIN 1 413 - -
Sto3g0084 413 SUPERFAMILY UBA-like 93 167 IPR009060 GO:0005515
Sto3g0084 413 Pfam PUB domain 320 391 IPR018997 -
Sto3g0084 413 SUPERFAMILY PUG domain-like 298 409 IPR036339 -
Sto3g0084 413 Coils Coil 219 264 - -
Sto3g0084 413 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Sto3g0084 413 MobiDBLite consensus disorder prediction 256 273 - -
Sto3g0084 413 PANTHER F13M7.16 PROTEIN 1 413 - -
Sto3g0084 413 MobiDBLite consensus disorder prediction 256 302 - -
Sto3g0084 413 SMART uba_6 115 153 IPR015940 -
Sto3g0084 413 Coils Coil 184 216 - -
Sto3g0084 413 SMART PGNneu 323 386 - -
Sto3g0084 413 MobiDBLite consensus disorder prediction 186 213 - -
Sto3g0084 413 CDD PUB_UBA_plant 307 413 - -
Sto3g0084 413 MobiDBLite consensus disorder prediction 171 213 - -
Sto3g0084 413 Pfam UBA/TS-N domain 119 151 IPR015940 -
Sto3g0084 413 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 113 154 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0084 Sto-Chr3 475351 481784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0084 108 413 C2H2 Transcription Factor Family AT1G04850 81.230 6.05e-154 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0084 K24348 - jre:109003439 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g0084 3 475351 481784 Sto3g0084 3 475351 481784 ECH