Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0060 ATGAGAGGAAGGAGTTATAGTCCGTCTCCGCCCAGGGGTTATGGTAGAAGAGGGAGAAGTCCTAGCCCTAGGGGCCGTTATGGTGGCCGTGGCAGAGATCTCCCTACCAGTCTCCTAGTTCGCAACCTTCGCCATGACTGCAGACCTGAGGATCTTCGTAGACTGTTTGGGCAATTTGGTGCTCTTAAGGACATATACCTTCCAAAGGATTATTACACTGGAGAACCCCGTGGCTTTGGTTTTGTCCAATACGTAGATCCTGCTGATGCTGCTGATGCTAAGTATCATGTGGATGGCCAAATTCTTCTTGGTCGAGAGTTGACTGTTGTTTTTGCTGAGGAGAATAGAAAGAAGCCCACTGAAATGAGGGCAAGAGAACGAAGGGGGCGGTTTTCTGATCGAAGAAGGTCTCCTCCTCGTTATTCTCGCTCACCTCGGTACTCCCGATCGCCACCACCACGTCATAGATCTCGATCTCGTAGCCGTGATTATTATTCACCTCCTCCCAAACGAAAGGAATATTCAAGATCTGTGTCACCTGAAGATAGAAGATACAGTCGAGAAAGAGAAAGATCTTGCTCACGGCAGAGTAGGGAGAGATCATACTCACGCTCTCCACCACCCTATAATGGTGGATCAAGGAGCCATAGTCAAAGTCCAGCTAAGGGCCCAAGCCGTAGCCGAAGTCAGAGTCCTAATCGTGATGATTATCCTAGGGAACCAGCTCGTGGTAGGTCCCCCAGTCAATGA 750 0.496 MRGRSYSPSPPRGYGRRGRSPSPRGRYGGRGRDLPTSLLVRNLRHDCRPEDLRRLFGQFGALKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKYHVDGQILLGRELTVVFAEENRKKPTEMRARERRGRFSDRRRSPPRYSRSPRYSRSPPPRHRSRSRSRDYYSPPPKRKEYSRSVSPEDRRYSRERERSCSRQSRERSYSRSPPPYNGGSRSHSQSPAKGPSRSRSQSPNRDDYPREPARGRSPSQ 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0060 249 MobiDBLite consensus disorder prediction 157 198 - -
Sto3g0060 249 SUPERFAMILY RNA-binding domain, RBD 36 141 IPR035979 GO:0003676
Sto3g0060 249 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 232 - -
Sto3g0060 249 MobiDBLite consensus disorder prediction 117 249 - -
Sto3g0060 249 MobiDBLite consensus disorder prediction 199 231 - -
Sto3g0060 249 MobiDBLite consensus disorder prediction 117 140 - -
Sto3g0060 249 Gene3D - 31 150 IPR012677 -
Sto3g0060 249 SMART rrm1_1 37 110 IPR000504 GO:0003723
Sto3g0060 249 MobiDBLite consensus disorder prediction 1 33 - -
Sto3g0060 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Sto3g0060 249 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 232 - -
Sto3g0060 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0060 Sto-Chr3 364505 367544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g0060 36 167 Eukaryotic Initiation Factors Gene Family AT4G34110 26.515 3.89e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0060 K12900 - gmx:100775883 272.322