Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g0002 ATGAATGTTATGGACACATACAAATTCTTGGCCTTGAGCAAATGCCAACAACCAAGCCAGATAGCCTATTCTATGTCAAAAGCCAATCTCTACGCTATTATATGGAGGAAGATTGGGAAGGCAAGTGAGCCAGGTTTTGATGAAAGTGATGAATTAGACGTTGAGGGGAACACATCTATAGTAGGGCATTATCAGGAATCTTTAGACTCACAATCAAAGAACCGTCCACCTCCAATTGTGGGCCTGGAGTTTGATTCTTTTGATGAAGCTTACAACTTTTACAATGTTTATGCTAAAGAACAAGGTTTTGGCATTAGAGTGAGCAACTCATGGTTCAGATCAAAAAGAAAAGAGCGTTACAGAGCAAAACTTAGCTGCAGTAGTGCCGGGTTCAAGAAAAAGAGTGAAGCCAACAATCCAAGACCAGAAACAAGAACTGGTTGTCCTGCAATGATAGTCATTAGGATGGCGGATACCAAAAGATGGAGGATAGTGGAAGTTGAACTGCAACACAACCATCAAGTGAATCCACAGGTTAAACGGTTCTATAAGTCACATAAGAAAATGATCCTTGCTGCCAGAAAAGCACAACCACCACCAGAGCCTATTACAGAGATACATACCATTAAGTTGTATTGGACAGCTGTTGGGGATGCCGGCTGCAATGGATACTCAAAATTTGTTGAAGGACAGGATGTTAACTTcgatcatttaaaatatttggaaCTTAAAGAAGGGGATGCCCAtgctatttataattatttttgccGAATGAAATTGACCAACCCAAATTTCTTCTACTTGTTTGATATTGATGATGATGGGCACCTAAAAAATGTGTTTTGGGCTGATGCCAGGTCGAGGGTGTCTTATGGTTACTTTAATGACACGGTTACTATAGATACAACTTGTTTAGCAAACAAATATGAGATTCCTCTGATATCATTTGTTGGAGTAAACAACCATGGACAATCAGTGCTATTGGGCTGTGGCTTCTTAGGGCATGAAACAGTAGATTATTTTGTTTGGATATTCAATGCATGGCTTAAATGTATGCTTGGTAGTCCGCCACATGTTGTTATTACTGACCAGAGCAAGCCTTTGCAAACTGCAGTTGCCCAGGTTTTTCCTCATGCCCGTCATTGTTATTCTTTGCAGTATATAATGCAGAGAGTTCCAGAAAAGTTGGGAGGGTTGAAGGGCTATGAAGCAATCAAAAGACAAATGAACAGAGCAGTTTACGAGTCCTTGAAGATAGTTGAGTTCGAAACTTCTTGGGCTGATATGATAAAAAAACATGGATTGGGCGATAACAAATGGCTTCAGTCATTGTACAACGATCGGCATCTGTGGGTTCCTGTTTACCTAAAAGACACTTTTTTTGCAGGAATGATCCCAACGAATGAAAATGAGGCCCTGACTGCATTTTTCGATGGATATGTACATAAACATACATCCTTTAAGGAATTTGTTGACAAGTACGACCTAGCTCTACACAGGAAGAACTTGAAAGAAGCCATGTCAGAGGTGGAGTCAAGGAAATTAAGCTTGGAACTGAATACAAGGTGTAATTTTGAACTGCAGCTCTCGAAGTTGTATAcaaaagaaatttttaaaaaattccagTCTGAGGTTGAGGGTATGTACTCTTGCTTCCACACAAGACAGGTAAATGTTAATGGATCTATAATAACATACATAGTGAAAGAACGAGTTGAAGTAGGGGAAAATgagaaggaaataaaaaaatttgaagttttgTATGAGACGACCGAACTGGACATTCGGTGTATTTGCAGTTTGTTCAATTACAAAGGCTATCTATGTAGGCATGCATTGAATGTTCTCAATTATAATGGAGTGGAGGAAGTCCCATCTCGGTACATCCTGCAACGTTGGAAGAAAGATTTCAAACAAAGGTTTATTCAAGACCATGTTTCTTGTAATGTTGATACATACAACCCTGTTTACTGGTATAAACAACTTTTTAATAATGCTCTTCCAGTACTAGAAGAAGGGGCAGAGTCACAGGAGCATTATATTATTGCTTTACAAGAATTGGAAGAGTTGTTGAACAAGTTTGATCTGGTGCGGAATAACTCATTTTAA 2109 0.3779 MNVMDTYKFLALSKCQQPSQIAYSMSKANLYAIIWRKIGKASEPGFDESDELDVEGNTSIVGHYQESLDSQSKNRPPPIVGLEFDSFDEAYNFYNVYAKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEANNPRPETRTGCPAMIVIRMADTKRWRIVEVELQHNHQVNPQVKRFYKSHKKMILAARKAQPPPEPITEIHTIKLYWTAVGDAGCNGYSKFVEGQDVNFDHLKYLELKEGDAHAIYNYFCRMKLTNPNFFYLFDIDDDGHLKNVFWADARSRVSYGYFNDTVTIDTTCLANKYEIPLISFVGVNNHGQSVLLGCGFLGHETVDYFVWIFNAWLKCMLGSPPHVVITDQSKPLQTAVAQVFPHARHCYSLQYIMQRVPEKLGGLKGYEAIKRQMNRAVYESLKIVEFETSWADMIKKHGLGDNKWLQSLYNDRHLWVPVYLKDTFFAGMIPTNENEALTAFFDGYVHKHTSFKEFVDKYDLALHRKNLKEAMSEVESRKLSLELNTRCNFELQLSKLYTKEIFKKFQSEVEGMYSCFHTRQVNVNGSIITYIVKERVEVGENEKEIKKFEVLYETTELDIRCICSLFNYKGYLCRHALNVLNYNGVEEVPSRYILQRWKKDFKQRFIQDHVSCNVDTYNPVYWYKQLFNNALPVLEEGAESQEHYIIALQELEELLNKFDLVRNNSF 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g0002 702 Pfam SWIM zinc finger 592 617 IPR007527 GO:0008270
Sto3g0002 702 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 55 698 - -
Sto3g0002 702 Coils Coil 500 520 - -
Sto3g0002 702 Pfam MULE transposase domain 298 390 IPR018289 -
Sto3g0002 702 SMART 26again6 595 622 IPR006564 GO:0008270
Sto3g0002 702 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 55 698 IPR031052 GO:0006355
Sto3g0002 702 ProSiteProfiles Zinc finger SWIM-type profile. 584 620 IPR007527 GO:0008270
Sto3g0002 702 Pfam FAR1 DNA-binding domain 92 177 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g0002 Sto-Chr3 35650 38531 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sto3g0002 MULE 2e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g0002 K17604 - gmx:100811666 1121.69